PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc003167.1_g00003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | ERF | ||||||||
Protein Properties | Length: 224aa MW: 24395.3 Da PI: 7.0613 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.1 | 9.1e-18 | 49 | 100 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 + y+GVr++ +Wv+e+r+p +k+ r++lg+f t+e+Aa+a++ a+++l+ge Itr_sc003167.1_g00003.1 49 PVYRGVRRRN-EDKWVCEVREP---NKKSRIWLGTFATPEMAARAHDVAALALRGE 100 68*****887.8******9998...347**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.2E-13 | 49 | 100 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.3E-30 | 50 | 107 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.57E-20 | 50 | 107 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 21.812 | 50 | 107 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.4E-29 | 50 | 113 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.27E-25 | 51 | 107 | No hit | No description |
PRINTS | PR00367 | 1.5E-7 | 51 | 62 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.5E-7 | 73 | 89 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MDFENDGNSS SSSSSSSSQE IAGDQAVAVA PVLQKRRAGR KKFRETRHPV YRGVRRRNED 60 KWVCEVREPN KKSRIWLGTF ATPEMAARAH DVAALALRGE AAALNFPGAS ESLPRAASCS 120 PADIRAAALQ LAYAPPPHPQ FPSANAVDRD HAKEAASSSR TIDLPGLDFF RNASSFLDEE 180 AVFNLPALLD NMAEGMLITP PAMKKGFSWG DEGDGIDLTL WKHY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-14 | 48 | 107 | 12 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019161981.1 | 1e-130 | PREDICTED: dehydration-responsive element-binding protein 1F-like | ||||
TrEMBL | A0A1S3Y762 | 4e-76 | A0A1S3Y762_TOBAC; dehydration-responsive element-binding protein 1F-like | ||||
STRING | XP_009624061.1 | 1e-76 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA263 | 24 | 183 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25490.1 | 5e-38 | C-repeat/DRE binding factor 1 |