PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc003141.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GRAS
Protein Properties Length: 113aa    MW: 12825.9 Da    PI: 8.2497
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc003141.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS44.82e-146110891137
                     GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLa.sRpe 137
                              +k  + +aN+aI e +e++++vHiiDf +  ++QW aL+q L+ +R++
  Itr_sc003141.1_g00001.1  61 PKWLFRVANHAIIETMERNKMVHIIDFHLADPTQWRALFQDLSaDRKG 108
                              5667789***********************************945543 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098512.0371113IPR005202Transcription factor GRAS
PROSITE profilePS512575129No hitNo description
PfamPF035147.1E-1261108IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 113 aa     Download sequence    Send to blast
MGRLPYERLL LMLLDNGTAL ILPPISCSCT VASSTSIYNT ELAWEMQPGP KPRKFEMASS  60
PKWLFRVANH AIIETMERNK MVHIIDFHLA DPTQWRALFQ DLSADRKGSH ISA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.17e-09scarecrow-like 3