PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc003123.1_g00002.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family B3
Protein Properties Length: 377aa    MW: 41038.4 Da    PI: 7.7764
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc003123.1_g00002.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3101.83.9e-3268172199
                              EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                              f+kv tpsdv+k++rlv+pk++ae++    ++++e++  l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F
  Itr_sc003123.1_g00002.1  68 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSSSNEKGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDIVSF 153
                              89****************************66677899************************************************ PP

                              EE-.SS.SEE..EEEEE-S CS
                       B3  83 kld.gr.sefelvvkvfrk 99 
                              ++  g+  + +l++ ++r+
  Itr_sc003123.1_g00002.1 154 HRGvGElGKDRLFIDWRRR 172
                              *666999999999999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.2E-4259177IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.49E-3065171IPR015300DNA-binding pseudobarrel domain
CDDcd100172.40E-2766155No hitNo description
PfamPF023621.1E-2968172IPR003340B3 DNA binding domain
SMARTSM010195.7E-2368173IPR003340B3 DNA binding domain
PROSITE profilePS5086314.63568173IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009908Biological Processflower development
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MRSFSSSAAS SSSSSSSQQR HAAALSYGLR QQGHQGGWLD EGCSSSPTAT GNNNGEGGRE  60
VIEREHMFDK VVTPSDVGKL NRLVIPKQHA EKYFPLDSSS NEKGLLLNFE DRNGKPWRFR  120
YSYWNSSQSY VMTKGWSRFV KDKKLDAGDI VSFHRGVGEL GKDRLFIDWR RRPNPHHEFH  180
LAAAIPPHFS FNRSFHHHQY PVAAAPAGWN YHHAMLVPPP PPPPGGHSHS HNSYAYNNYA  240
IGCGPPPPPP NYPTFNSQFL NGNPCPPGSA IYYHRSGTEE AAPAPAPSGG GAMVLDSVPV  300
VQGKAAAAKR LRLFGVNMEC AIPESDDFCD HPTSSPAALI PSSYHLSSSS YGDGPSDQDS  360
PVDKAKTSSS MSLDLDI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A2e-67631743115B3 domain-containing transcription factor NGA1
5os9_B2e-67631743115B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRegulates lateral organ growth. Functionally redundant with NGA2, NGA3 and NGA4. {ECO:0000269|PubMed:16603651}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019184975.10.0PREDICTED: B3 domain-containing transcription factor NGA1-like
SwissprotO827997e-78NGA1_ARATH; B3 domain-containing transcription factor NGA1
TrEMBLM1AWD51e-104M1AWD5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000318631e-105(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28172350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.12e-74B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Lee BH, et al.
    The Arabidopsis thaliana NGATHA transcription factors negatively regulate cell proliferation of lateral organs.
    Plant Mol. Biol., 2015. 89(4-5): p. 529-38
    [PMID:26433582]
  3. Lozano-Sotomayor P, et al.
    Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
    Plant J., 2016. 88(3): p. 437-451
    [PMID:27402171]
  4. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]
  5. Sasnauskas G,Manakova E,Lapėnas K,Kauneckaitė K,Siksnys V
    DNA recognition by Arabidopsis transcription factors ABI3 and NGA1.
    FEBS J., 2018. 285(21): p. 4041-4059
    [PMID:30183137]
  6. Sato H, et al.
    Arabidopsis thaliana NGATHA1 transcription factor induces ABA biosynthesis by activating NCED3 gene during dehydration stress.
    Proc. Natl. Acad. Sci. U.S.A., 2018. 115(47): p. E11178-E11187
    [PMID:30397148]