PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc003097.1_g00005.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB_related
Protein Properties Length: 296aa    MW: 32422.9 Da    PI: 6.535
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc003097.1_g00005.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.31.3e-11556147
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                             +++WT eE+  l+ +v+++G g W+tI +          R+  ++k++w+++
  Itr_sc003097.1_g00005.1  5 KQKWTSEEEAALKAGVAKYGVGKWSTILKDPEfapvlRARSNVDLKDKWRNL 56
                             79***********************************9************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.859161IPR017930Myb domain
SuperFamilySSF466898.22E-16262IPR009057Homeodomain-like
SMARTSM007175.9E-7459IPR001005SANT/Myb domain
PfamPF002494.0E-8556IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-14556IPR009057Homeodomain-like
CDDcd116601.08E-20656No hitNo description
SuperFamilySSF467851.8E-17118193IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005266.8E-18118183IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.101.2E-17119189IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150425.357120188IPR005818Linker histone H1/H5, domain H15
PfamPF005385.4E-13123189IPR005818Linker histone H1/H5, domain H15
CDDcd000731.08E-10126182No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0000786Cellular Componentnucleosome
GO:0005730Cellular Componentnucleolus
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043047Molecular Functionsingle-stranded telomeric DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MGAPKQKWTS EEEAALKAGV AKYGVGKWST ILKDPEFAPV LRARSNVDLK DKWRNLHVMA  60
NGWGSRQRGK IASKSAQPIS KRDDDSMALT TVVDNDMEVP DAKPLATVSE TLPDVDSKKP  120
ITSLDDLIME AITKLKEPRG SSRNAISMYI EEHYKAPTNL ERLLAANLKD LTERGRLIKV  180
KHHYRIAPSG MSSIDVKGDP SLLLMEGKQT HPPMPEKNGT RILTKAQIDA ELEKMRNMNA  240
QEAAAAAAQA VAEAEAAIAE AEWAAREAEE AEAEAEAARC FAEAATKALN YQTIHV
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but it can also bind to the single G-rich telomeric strand.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00597DAPTransfer from AT5G67580Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019173270.11e-171PREDICTED: telomere repeat-binding factor 1-like isoform X1
RefseqXP_019173271.11e-171PREDICTED: telomere repeat-binding factor 1-like isoform X1
SwissprotQ9FJW57e-71TRB2_ARATH; Telomere repeat-binding factor 2
TrEMBLA0A484NJL61e-122A0A484NJL6_9ASTE; Uncharacterized protein
STRINGSolyc02g064630.2.11e-115(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51222235
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.33e-71telomere repeat binding factor 1
Publications ? help Back to Top
  1. Lee WK,Cho MH
    Telomere-binding protein regulates the chromosome ends through the interaction with histone deacetylases in Arabidopsis thaliana.
    Nucleic Acids Res., 2016. 44(10): p. 4610-24
    [PMID:26857545]
  2. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]