PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc003094.1_g00006.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

NAC

Protein Properties

Length: 281aa MW: 31935.8 Da PI: 4.7412

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc003094.1_g00006.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	165.1	2.5e-51	18	146	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWk 84 lp+GfrFhPtdeel+++yLk +++g+k e+ ++i e+diyk+ePwdLp + +k++++ew+fF++ ++ky++g+r nrat+ g+Wk Itr_sc003094.1_g00006.1 18 LPVGFRFHPTDEELINHYLKLNINGSKAEV-SMICEIDIYKLEPWDLPdlSVIKSHDNEWFFFCPIERKYQNGQRMNRATELGFWK 102 79***********************999.89**********96448899999************************ PP NAM 85 atgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 atgkd+++lskk+ ++g+kktLv+y+gr ++g++++Wv+heyr+ Itr_sc003094.1_g00006.1 103 ATGKDRNILSKKRVKIGMKKTLVYYEGRGSNGKRSNWVIHEYRA 146 ****************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.35E-55	9	160	IPR003441	NAC domain
PROSITE profile	PS51005	50.204	18	160	IPR003441	NAC domain
Pfam	PF02365	4.8E-26	19	145	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 281 aa Download sequence Send to blast
MVPLERSTTK VLLPPSSLPV GFRFHPTDEE LINHYLKLNI NGSKAEVSMI CEIDIYKLEP 60 WDLPDLSVIK SHDNEWFFFC PIERKYQNGQ RMNRATELGF WKATGKDRNI LSKKRVKIGM 120 KKTLVYYEGR GSNGKRSNWV IHEYRATGET PFVLCRLFKK NENGESGNSN GVEPNVSSPI 180 VVKSPGEDDQ SDRINANNAE KYVDIVHDPD LEEALAYLYE PSEEHFDIFS LPQTEMEGLG 240 FSYAVTNDIQ SLSETNISDA NEFLNSFLVS PDEIPYANGS I

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	2e-42	17	162	14	171	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator essential for the anti-viral defense called virus basal resistance response pathway (PubMed:11041886, PubMed:15629774, PubMed:18785827, PubMed:24418554). Not involved in HRT-mediated hypersensitive response (HR) and resistance to TCV (PubMed:18785827). Binds DNA non specifically (PubMed:15629774). Activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (By similarity). {ECO:0000250\|UniProtKB:Q9SCK6, ECO:0000269\|PubMed:11041886, ECO:0000269\|PubMed:15629774, ECO:0000269\|PubMed:18785827, ECO:0000269\|PubMed:24418554}.; FUNCTION: (Microbial infection) Compromised function in defense response pathway when interacting with the invading viral capsid protein (CP) of turnip crinkle virus (TCV) due to abnormal subcellular localization. {ECO:0000269\|PubMed:11041886, ECO:0000269\|PubMed:15629774}.
UniProt	Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). {ECO:0000250\|UniProtKB:Q949N0}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold, heat and drought stresses. {ECO:0000269\|PubMed:17158162}.
UniProt	INDUCTION: Induced by bacterial pathogens type III effector proteins (TTEs). {ECO:0000269\|PubMed:16553893}.; INDUCTION: (Microbial infection) Accumulates 2 days post infection with turnip crinkle virus (TCV) (PubMed:24418554). {ECO:0000269\|PubMed:24418554}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019200470.1	1e-148	PREDICTED: protein NTM1-like 9
Swissprot	B5X570	1e-66	NAC14_ARATH; NAC domain-containing protein 14
Swissprot	Q9LKG8	3e-67	NAC91_ARATH; NAC domain-containing protein 91
TrEMBL	A0A328E0U7	1e-107	A0A328E0U7_9ASTE; Uncharacterized protein
TrEMBL	A0A484L8F9	1e-107	A0A484L8F9_9ASTE; Uncharacterized protein
STRING	Solyc06g073050.2.1	5e-83	(Solanum lycopersicum)
STRING	PGSC0003DMT400069511	5e-83	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3363	24	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G33060.2	9e-69	NAC 014

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ben Daniel BH, et al. Identification of novel transcriptional regulators of Zat12 using comprehensive yeast one-hybrid screens. Physiol Plant, 2016. 157(4): p. 422-41 [PMID:26923089] Li Y, et al. The interaction between Turnip crinkle virus p38 and Cucumber mosaic virus 2b and its critical domains. Virus Res., 2016. 222: p. 94-105 [PMID:27288723]