PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc003068.1_g00004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | ERF | ||||||||
Protein Properties | Length: 204aa MW: 21891.7 Da PI: 9.0589 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.3 | 1.8e-18 | 25 | 74 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++GVr ++ +g++ AeIrd ++ ++r +lg+f +aeeAa+a++aa++kl+g Itr_sc003068.1_g00004.1 25 KFRGVRKRS-WGKFSAEIRDpWK----KTRLWLGTFLSAEEAARAYDAAARKLNG 74 89****888.**********883....5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 3.6E-33 | 25 | 88 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.77E-20 | 25 | 82 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.4E-10 | 25 | 74 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.9E-29 | 25 | 82 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.878 | 25 | 82 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.98E-14 | 25 | 81 | No hit | No description |
PRINTS | PR00367 | 3.1E-9 | 26 | 37 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.1E-9 | 48 | 64 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
MARGRAAAAA AAGDAVGSGE LKEVKFRGVR KRSWGKFSAE IRDPWKKTRL WLGTFLSAEE 60 AARAYDAAAR KLNGPRVKTN FPPPPISQLP PYNQTAIPKN PLIGSLMISQ RPASSSMSST 120 VESFSGPRPP PPHTAATPNR RHPRSPPIAP DDCHSDCDSS SSVVDDGDCE NIASSSFRKP 180 LSFDLNLPPA MDDVCDLHST ALCL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 5e-16 | 26 | 82 | 6 | 63 | ATERF1 |
3gcc_A | 5e-16 | 26 | 82 | 6 | 63 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional repressor and may regulate other AtERFs (By similarity). {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019194387.1 | 2e-76 | PREDICTED: ethylene-responsive transcription factor 3-like | ||||
Swissprot | Q9SXS8 | 2e-50 | ERF3_TOBAC; Ethylene-responsive transcription factor 3 | ||||
TrEMBL | A0A0V0HV08 | 2e-82 | A0A0V0HV08_SOLCH; Putative ethylene-responsive transcription factor 3-like | ||||
STRING | PGSC0003DMT400037359 | 1e-73 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3330 | 23 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50640.1 | 2e-21 | ethylene responsive element binding factor 3 |