PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc003030.1_g00004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | NAC | ||||||||
Protein Properties | Length: 262aa MW: 30000.1 Da PI: 8.2749 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 114.7 | 9.8e-36 | 6 | 121 | 14 | 128 |
NAM 14 lvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgkdkevlskk 96 lvv+yL++kv++k++++ e+i+ vdiyk+ePw+L++ +v+++++ewyf + +kky+ ++ n+ +t++gyWk++ kd++v + k Itr_sc003030.1_g00004.1 6 LVVYYLRRKVRRKPFHV-EAIAVVDIYKHEPWELHAfcAVNTTDQEWYFLVGFEKKYKGSRLINKsSTEKGYWKTSEKDQTVSH-K 89 99***************.89**************94457888999************9877788879***************99.8 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 +e vg+kktLv++ g+ p+g++t+Wvmheyrl Itr_sc003030.1_g00004.1 90 REIVGMKKTLVYHAGKPPNGRRTNWVMHEYRL 121 999***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 39.059 | 1 | 145 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 3.66E-39 | 6 | 145 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-16 | 6 | 121 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 262 aa Download sequence Send to blast |
MNPSPLVVYY LRRKVRRKPF HVEAIAVVDI YKHEPWELHA FCAVNTTDQE WYFLVGFEKK 60 YKGSRLINKS STEKGYWKTS EKDQTVSHKR EIVGMKKTLV YHAGKPPNGR RTNWVMHEYR 120 LVEAELDKAG VEQDDSFMLC KIFCKNEMGP PCSGVYGPFN EEDWENDEVR QAGRVYKQRN 180 TKNRLKFDLF PSNKCVSSDE ASSLSTDVPV PSSGLLNFSL SAQPNLENHS HLPPPPKVVG 240 AFDSSCLEKS VQCLQAISQV HE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-26 | 6 | 146 | 30 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-26 | 6 | 146 | 30 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-26 | 6 | 146 | 30 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-26 | 6 | 146 | 30 | 166 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-26 | 6 | 146 | 33 | 169 | NAC domain-containing protein 19 |
3swm_B | 2e-26 | 6 | 146 | 33 | 169 | NAC domain-containing protein 19 |
3swm_C | 2e-26 | 6 | 146 | 33 | 169 | NAC domain-containing protein 19 |
3swm_D | 2e-26 | 6 | 146 | 33 | 169 | NAC domain-containing protein 19 |
3swp_A | 2e-26 | 6 | 146 | 33 | 169 | NAC domain-containing protein 19 |
3swp_B | 2e-26 | 6 | 146 | 33 | 169 | NAC domain-containing protein 19 |
3swp_C | 2e-26 | 6 | 146 | 33 | 169 | NAC domain-containing protein 19 |
3swp_D | 2e-26 | 6 | 146 | 33 | 169 | NAC domain-containing protein 19 |
4dul_A | 2e-26 | 6 | 146 | 30 | 166 | NAC domain-containing protein 19 |
4dul_B | 2e-26 | 6 | 146 | 30 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor that binds to the motif 5'-(C/T)A(C/A)G-3' in the promoter of target genes (PubMed:25578968). Binds also to the 5'-CTTGNNNNNCAAG-3' consensus sequence in chromatin (PubMed:26617990). Can bind to the mitochondrial dysfunction motif (MDM) present in the upstream regions of mitochondrial dysfunction stimulon (MDS) genes involved in mitochondrial retrograde regulation (MRR) (PubMed:24045019). Together with NAC050 and JMJ14, regulates gene expression and flowering time by associating with the histone demethylase JMJ14, probably by the promotion of RNA-mediated gene silencing (PubMed:25578968, PubMed:26617990). Regulates siRNA-dependent post-transcriptional gene silencing (PTGS) through SGS3 expression modulation (PubMed:28207953). Required during pollen development (PubMed:19237690). {ECO:0000269|PubMed:19237690, ECO:0000269|PubMed:24045019, ECO:0000269|PubMed:25578968, ECO:0000269|PubMed:26617990, ECO:0000269|PubMed:28207953}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by type III effector proteins (TTEs) secreted by the pathogenic bacteria P.syringae pv. tomato DC3000 during basal defense. {ECO:0000269|PubMed:16553893}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019196370.1 | 2e-74 | PREDICTED: NAC domain-containing protein 82-like | ||||
Swissprot | Q9SQY0 | 4e-56 | NAC52_ARATH; NAC domain containing protein 52 | ||||
TrEMBL | A0A2J6M5L4 | 4e-58 | A0A2J6M5L4_LACSA; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6050 | 23 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10490.1 | 9e-54 | NAC domain containing protein 52 |
Publications ? help Back to Top | |||
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