PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc002978.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family Dof
Protein Properties Length: 279aa    MW: 30012.7 Da    PI: 8.8131
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc002978.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof120.46.7e-3865125262
                   zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                              +++al+cprC+stntkfCy+nnysl+qPr+fCk+CrryWt+GGalrnvPvGg++r+n+k+s
  Itr_sc002978.1_g00001.1  65 QDAALNCPRCESTNTKFCYFNNYSLTQPRHFCKSCRRYWTRGGALRNVPVGGACRRNNKRS 125
                              57789****************************************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-3349123IPR003851Zinc finger, Dof-type
PfamPF027014.9E-3267123IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.06869123IPR003851Zinc finger, Dof-type
PROSITE patternPS01361071107IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MVFGSIPAYL DPANWQQVQQ NHHTGICVPP SSQCSSAPVP APAQVGSIRP GSMAERARLA  60
NIPAQDAALN CPRCESTNTK FCYFNNYSLT QPRHFCKSCR RYWTRGGALR NVPVGGACRR  120
NNKRSNTKPP SNSTNNTPTS STSSPASTTL LGFLPPNFNL PPLLGAQLSD THFHGGEGIG  180
SILSGSAAVD PWRLQQASPR QMSLLGGLNP SSYGLYPFQD GSGTMLGQMG SNSVMKMEQG  240
NQESRLFSPW SQIFMIPASD EQWNCVADVS ANLNSSANM
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements. {ECO:0000269|PubMed:12887587}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin and salicylic acid (SA). Repressed by jasmonic acid (JA). {ECO:0000269|PubMed:10758484, ECO:0000269|PubMed:12887587}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019161367.11e-140PREDICTED: dof zinc finger protein DOF2.4-like isoform X2
SwissprotQ9M2U13e-48DOF36_ARATH; Dof zinc finger protein DOF3.6
TrEMBLA0A2G9GDF81e-60A0A2G9GDF8_9LAMI; Uncharacterized protein
STRINGGLYMA12G06880.22e-60(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19172463
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55370.12e-46OBF-binding protein 3