PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc002967.1_g00007.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | GRF | ||||||||
Protein Properties | Length: 364aa MW: 40511.9 Da PI: 7.7381 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 78.4 | 7e-25 | 77 | 120 | 1 | 44 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e Itr_sc002967.1_g00007.1 77 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVE 120 79***************************************987 PP | |||||||
2 | QLQ | 60.7 | 4e-21 | 9 | 43 | 2 | 36 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 +FTa+Q+q+L++Q+l+yKy+++++PvPp+Ll i+ Itr_sc002967.1_g00007.1 9 PFTATQWQELEHQALIYKYMVSGMPVPPDLLYSIR 43 8******************************9887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 7.5E-12 | 8 | 44 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 4.2E-16 | 9 | 42 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 23.364 | 9 | 44 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.325 | 77 | 121 | IPR014977 | WRC domain |
Pfam | PF08879 | 3.4E-21 | 78 | 120 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 364 aa Download sequence Send to blast |
MNNGRSRLPF TATQWQELEH QALIYKYMVS GMPVPPDLLY SIRRSLDSSL SSKLLLHQTP 60 QHMGWSCFQM GFGKKIDPEP GRCRRTDGKK WRCSKEAYPD SKYCERHMHR GRNRSRKPVE 120 VIPTSSAAAA PSTPPPPTAI PFSSINKNTP TPPSLLYPHS TPSRSHQGIA LSSQDHTANF 180 LLDSVAYSRN NGYGHGMKDE VDEHVFFSSE GSGSIRSSIS GSNNSVDDSA WQLAPLTMAS 240 PPLGQLKQRD YCGPQNGYSS YLHLHEASSR QQRQGEGDEG EEGGGEDYYG LGSGGSKTGV 300 GMMINPEDQQ QQPKKVMHHF FDEWPKENKD SWLDSGDKYS ARGPHLSISV PNSSHDFFIT 360 HNEK |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC182662 | 1e-48 | AC182662.2 Populus trichocarpa clone Pop1-15O24, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019173386.1 | 0.0 | PREDICTED: growth-regulating factor 1-like isoform X2 | ||||
TrEMBL | A0A484LXQ9 | 1e-158 | A0A484LXQ9_9ASTE; Uncharacterized protein | ||||
STRING | XP_009767378.1 | 1e-132 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA743 | 23 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13960.1 | 4e-49 | growth-regulating factor 5 |