PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc002961.1_g00003.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB_related
Protein Properties Length: 272aa    MW: 29801 Da    PI: 9.0113
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc002961.1_g00003.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.14.9e-14116160347
                              SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                              +W++eE+ +++ + ++lG g+W+ I+r++ ++Rt+ q+ s+ qky
  Itr_sc002961.1_g00003.1 116 PWSEEEHRIFLVGLEKLGRGDWRGISRHFVTTRTPTQIASHAQKY 160
                              8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501589.043318IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129417.987109165IPR017930Myb domain
SuperFamilySSF466891.72E-17111166IPR009057Homeodomain-like
TIGRFAMsTIGR015573.8E-17112164IPR006447Myb domain, plants
SMARTSM007178.5E-11113163IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.8E-11115159IPR009057Homeodomain-like
PfamPF002491.4E-11116160IPR001005SANT/Myb domain
CDDcd001675.82E-10116161No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MTRKCSSCGK TGHNSRTCNN NNDDHHDQRT SSYGDSMKLF GVKLIGSQNS SSSYSFVMKK  60
SFSDDCLPAA SYSFVDSSFG SSGFLLDENF DDKVPACGYI SDGLDAGNRE KKRGVPWSEE  120
EHRIFLVGLE KLGRGDWRGI SRHFVTTRTP TQIASHAQKY FLRQNSLNSR KRRRSLFDLA  180
WKADESRVLC GKMAKSRSSS IIDFSSTTTS LSAIALSSGQ DSKSSQYSNI ISASSMSFAT  240
HNDNQNNIGV QSPSPPPSPD LELTLGGTIS VV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1169173RKRRR
2169174RKRRRS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00565DAPTransfer from AT5G56840Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019184781.11e-145PREDICTED: transcription factor MYB1R1-like
TrEMBLA0A1S4CBQ03e-65A0A1S4CBQ0_TOBAC; myb-like protein J
STRINGXP_009631208.15e-66(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA33852147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56840.15e-35MYB_related family protein