PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc002865.1_g00003.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 783aa MW: 87940.5 Da PI: 9.3877

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc002865.1_g00003.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	63.8	4.8e-20	59	157	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..........tekerrtraetrtgCkaklkvkkekdgkw 76 +fY +YA +vGF+vr+s+++k r g++ ++ +vCs+eg+++++k+ + +++r r+++r+gC+ak+ +k++ dg + Itr_sc002865.1_g00003.1 59 DFYVRYACTVGFDVRRSTESKD-RVGKVLRKYLVCSREGFKQPTKDVglvgegvgdtSISSKRCRVTNRVGCNAKIILKLMGDGGY 143 6***************9998.6777************9988****988899999****************** PP FAR1 77 evtkleleHnHela 90 v +le H+H+l+ Itr_sc002865.1_g00003.1 144 SVFSLEVRHTHSLC 157 ***********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.4E-17	59	157	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.4E-16	392	472	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.817	569	601	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	2.4E-5	573	593	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.5E-5	576	603	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 783 aa Download sequence Send to blast
MFVCASVSDD EGLSGGTGGS NECVMNFSPR GTKYWIPICD EASQPFVGQR FSKLDDGVDF 60 YVRYACTVGF DVRRSTESKD RVGKVLRKYL VCSREGFKQP TKDVGLVGEG VGDTSISSKR 120 CRVTNRVGCN AKIILKLMGD GGYSVFSLEV RHTHSLCSDA AKPFMRMVGD YVDVGATGVD 180 FQSFKRDLMD TSRVVTILKT LFVSSRGAGT LWPRLPRIKR ATIRRLSTQT WTRRTKPWDE 240 RRWLEGNMSR VLREKTVYSC VLGVNGRNRE VTKVAVRDIV HVCVPSRHSL CRETSRSAGF 300 ETSHCNETSN WSTRHRTRVL RDIALVRDLV RDIGLPLESS RVCFGQTRLR GGILSALVML 360 CPSMRRIRLT EYILVCAFMS IAMCTWVVFS GYNLVFIPFT NMDNHKKSVM FAAGFIAKED 420 IDSYVWLLDN FKRAMGNEST YVVTDQDLSL RVAVPRFFTF ARHRFCMWHI MTKVGDKVRA 480 VLTNDQPFRR DLNAIVWDES ITIEQFESKW LQIMEVRLIV KSISRLSSMM YTEIVAGCFE 540 CRVLSFAADD DVKRVEVEGE NGVVCVVVFH IAETTASCSC RMFERVGLLC RHIFLVLKDA 600 HVDSIPACYV VSRWTHDVYK RPIYDIDGVH DASALRGNSS KSAMKEVWND FYSCVALAGD 660 NFDRVSELSP ILKELKLSFV DADSTLGSSV AKFGVIRSFG GLLASSEIVV HPPTVAKNKG 720 SGKRFKIAKE LALEKAAQYT RECATCHKCN GHDSCNCPLN PKSKSNVQSQ SKVKAKSKSK 780 AKA

Sequence ? help Back to Top

Protein Sequence Length: 783 aa Download sequence Send to blast

MFVCASVSDD EGLSGGTGGS NECVMNFSPR GTKYWIPICD EASQPFVGQR FSKLDDGVDF  60
YVRYACTVGF DVRRSTESKD RVGKVLRKYL VCSREGFKQP TKDVGLVGEG VGDTSISSKR  120
CRVTNRVGCN AKIILKLMGD GGYSVFSLEV RHTHSLCSDA AKPFMRMVGD YVDVGATGVD  180
FQSFKRDLMD TSRVVTILKT LFVSSRGAGT LWPRLPRIKR ATIRRLSTQT WTRRTKPWDE  240
RRWLEGNMSR VLREKTVYSC VLGVNGRNRE VTKVAVRDIV HVCVPSRHSL CRETSRSAGF  300
ETSHCNETSN WSTRHRTRVL RDIALVRDLV RDIGLPLESS RVCFGQTRLR GGILSALVML  360
CPSMRRIRLT EYILVCAFMS IAMCTWVVFS GYNLVFIPFT NMDNHKKSVM FAAGFIAKED  420
IDSYVWLLDN FKRAMGNEST YVVTDQDLSL RVAVPRFFTF ARHRFCMWHI MTKVGDKVRA  480
VLTNDQPFRR DLNAIVWDES ITIEQFESKW LQIMEVRLIV KSISRLSSMM YTEIVAGCFE  540
CRVLSFAADD DVKRVEVEGE NGVVCVVVFH IAETTASCSC RMFERVGLLC RHIFLVLKDA  600
HVDSIPACYV VSRWTHDVYK RPIYDIDGVH DASALRGNSS KSAMKEVWND FYSCVALAGD  660
NFDRVSELSP ILKELKLSFV DADSTLGSSV AKFGVIRSFG GLLASSEIVV HPPTVAKNKG  720
SGKRFKIAKE LALEKAAQYT RECATCHKCN GHDSCNCPLN PKSKSNVQSQ SKVKAKSKSK  780
AKA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	9e-18	FAR1-related sequence 5