PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc002835.1_g00004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | ERF | ||||||||
Protein Properties | Length: 269aa MW: 29483 Da PI: 4.8116 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.2 | 2.3e-19 | 114 | 165 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+GVr+++ +g+++AeIrdps+ng +r++lg++ tae+Aa a+++a+ +++g+ Itr_sc002835.1_g00004.1 114 HYRGVRRRP-WGKFAAEIRDPSKNG--ARVWLGTYETAEDAAVAYDRAAFRIRGA 165 8********.***********9998..*************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 8.03E-31 | 113 | 172 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 2.0E-31 | 113 | 172 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 7.5E-13 | 114 | 164 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.55E-23 | 114 | 174 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 2.2E-37 | 114 | 178 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.526 | 114 | 172 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.1E-10 | 115 | 126 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.1E-10 | 138 | 154 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 269 aa Download sequence Send to blast |
MMYGDDNADF ALLESIRRHL LDDFDDPVLG LGESWGKWTV PAPTDYNSPD SNISGSSGWL 60 SWVDEEETPS PMVKEEPETM GFHEFPTILD FTAAVPPPQK VEVSPAPPPV VEKHYRGVRR 120 RPWGKFAAEI RDPSKNGARV WLGTYETAED AAVAYDRAAF RIRGARALLN FPLRINSGEP 180 EPVRITTKKR LAASTDYCSP TSSSSSSTTS DIVSSSKRMK KAAESGPPDP SITRPIVNAV 240 DPRWTLVQYG AVSLAEDNAV VSGTVFLVQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 8e-39 | 113 | 179 | 4 | 70 | ATERF1 |
3gcc_A | 8e-39 | 113 | 179 | 4 | 70 | ATERF1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Involved in disease resistance pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:12805630, ECO:0000269|PubMed:9756931}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by jasmonate (JA) and Alternaria brassicicola (locally and systemically). Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2) while wounding induction does not require EIN2. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:12805630}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019190741.1 | 1e-125 | PREDICTED: ethylene-responsive transcription factor 2-like | ||||
Swissprot | O80338 | 7e-50 | EF101_ARATH; Ethylene-responsive transcription factor 2 | ||||
TrEMBL | A0A2Z7DG33 | 7e-55 | A0A2Z7DG33_9LAMI; Ethylene-responsive transcription factor 1A-like | ||||
STRING | Migut.A00994.1.p | 2e-54 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47220.1 | 4e-42 | ethylene responsive element binding factor 2 |
Publications ? help Back to Top | |||
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