PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc002833.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family FAR1
Protein Properties Length: 133aa    MW: 14738.7 Da    PI: 8.4756
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc002833.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR126.22.7e-0864121154
                     FAR1   1 kfYneYAkevGFsvrkskskks....krngeitkrtfvCskegkreeekkktekerrt 54 
                              +fY++YA +vG  + k  +++s    +r+g it ++ vCs+eg++++  ++++ +++ 
  Itr_sc002833.1_g00001.1  64 EFYKNYAAKVGMITIKFDTRSSfvvkSRDGMITIKHIVCSREGFKNSGAQHSNYKSNA 121
                              6**********8888777777777778999***************9998885544444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.6E-664118IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 133 aa     Download sequence    Send to blast
MEEFDQVPSN LQFGNNLSLS RSNKSDACTL TISLGMTQYW TPHCEDEIKP LVGMSFTTLE  60
AAIEFYKNYA AKVGMITIKF DTRSSFVVKS RDGMITIKHI VCSREGFKNS GAQHSNYKSN  120
ANAGEGSSIP KKI
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019156915.13e-47PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_019175424.12e-49PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18960.13e-10FAR1-related sequence 12