PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc002795.1_g00006.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB
Protein Properties Length: 293aa    MW: 33126.4 Da    PI: 9.7454
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc002795.1_g00006.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.43.9e-09549345
                             SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
          Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                             +WT+ E + + +a +++ ++   +Wk++a++++ g+t  ++   + 
  Itr_sc002795.1_g00006.1  5 KWTPAENKAFENALALYDKDtpdRWKKVAEMVP-GKTVTDVMRQYK 49
                             8********************************.****99988775 PP
2Myb_DNA-binding44.14.7e-14120164347
                              SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                              +WT+eE++l++ + k++G+g+W+ I+r +  +Rt+ q+ s+ qk+
  Itr_sc002795.1_g00006.1 120 PWTEEEHKLFLMGLKKYGKGDWRNISRNFVITRTPTQVASHAQKF 164
                              7*****************************99***********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.719154IPR017884SANT domain
SMARTSM007173.5E-10254IPR001005SANT/Myb domain
PfamPF002496.8E-8549IPR001005SANT/Myb domain
CDDcd001671.14E-8551No hitNo description
Gene3DG3DSA:1.10.10.602.6E-4550IPR009057Homeodomain-like
SuperFamilySSF466897.48E-12559IPR009057Homeodomain-like
PROSITE profilePS5129418.707113169IPR017930Myb domain
SuperFamilySSF466891.0E-16114169IPR009057Homeodomain-like
TIGRFAMsTIGR015578.8E-17116168IPR006447Myb domain, plants
SMARTSM007179.1E-12117167IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.9E-12118160IPR009057Homeodomain-like
PfamPF002496.1E-12120163IPR001005SANT/Myb domain
CDDcd001672.60E-11120165No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MSFTKWTPAE NKAFENALAL YDKDTPDRWK KVAEMVPGKT VTDVMRQYKE LEDDISSIEA  60
GLMDLIPFPA NTTRSASASA FTLEWGCSHP FDAQKQCFVA GGKRPPSNRL PEQERKKGIP  120
WTEEEHKLFL MGLKKYGKGD WRNISRNFVI TRTPTQVASH AQKFFIRQHS GGKDKRRASI  180
HDITTVNLNE NQTPSPDNKI PPGSTDQPVV VSRQQNSALH HKMPFHWDHL GLNSAQANLF  240
MSPPYGIDSS YGMNKLQSLG MQRAAAMHHE SSYFGSQIMP FQIQSAAPQY YRA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-146691171RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019188735.10.0PREDICTED: transcription factor DIVARICATA-like
SwissprotQ8S9H71e-122DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A2G3CBQ61e-137A0A2G3CBQ6_CAPCH; Transcription factor DIVARICATA
STRINGXP_009603384.11e-137(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45824140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58900.12e-90Homeodomain-like transcriptional regulator
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]