PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc002785.1_g00005.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 307aa    MW: 32520 Da    PI: 8.313
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc002785.1_g00005.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.29.6e-1957106255
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                              +y+GVr+++ +gr++AeIrdp     +  r +lg+++taeeAa a++aa+++++g
  Itr_sc002785.1_g00005.1  57 KYRGVRRRP-WGRYAAEIRDPQ----SkERRWLGTYDTAEEAACAYDAAARAMRG 106
                              8********.**********93....35999**********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.1E-2957113IPR001471AP2/ERF domain
SMARTSM003801.4E-3357120IPR001471AP2/ERF domain
CDDcd000188.00E-1857113No hitNo description
PfamPF008471.1E-1157106IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-2157114IPR016177DNA-binding domain
PROSITE profilePS5103222.28657114IPR001471AP2/ERF domain
PRINTSPR003673.2E-95869IPR001471AP2/ERF domain
PRINTSPR003673.2E-98096IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MEDAIKRLNG FTNNSSDLIP PLPKRCGAAA AGSSATNRRA AAAARDGGGS GGGGIIKYRG  60
VRRRPWGRYA AEIRDPQSKE RRWLGTYDTA EEAACAYDAA ARAMRGVKAR TNFVYPVSPP  120
YPAAVHGGNF PVSNFPAFFP PVFPSFSSQS NQTPNNPMSL CDHQLALMLN VDNGSSFLNE  180
ITALQARTSG SIFNPQTTLS SSSPTSADNN SNSGMEFFES QPPNSGLLGD VLNGFFPKPQ  240
QAPKSSEPST SHAKKSVDQK GQFGICIDEA AGELGNFNNN NGFSGGLPVD DVVFGDAAGV  300
QLSRAFW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-1946113271Ethylene-responsive transcription factor ERF096
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019160911.11e-132PREDICTED: ethylene-responsive transcription factor ESR2-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24590.12e-12DORNROSCHEN-like