PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc002744.1_g00008.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 431aa MW: 49268.6 Da PI: 8.4049

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc002744.1_g00008.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	61.9	1.9e-19	21	108	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnH 87 Yn+YA++vGFsvrk k++++ +++++++tf Csk g++++e+ + ++ rtgC a ++ + +g+ vtk e+ HnH Itr_sc002744.1_g00008.1 21 LYNDYAYRVGFSVRKGKQRYQGSTKNVKMKTFLCSKAGRKSKENIC--VKAYSKIDLRTGCGAFVQFDVDGNGVGTVTKHEKAHNH 104 7************************************9998877..8889999*************************** PP FAR1 88 elap 91 el++ Itr_sc002744.1_g00008.1 105 ELCT 108 95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.2E-15	21	107	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 431 aa Download sequence Send to blast
CAVDQDLVGI VVSNGDEAYE LYNDYAYRVG FSVRKGKQRY QGSTKNVKMK TFLCSKAGRK 60 SKENICVKAY SKIDLRTGCG AFVQFDVDGN GVGTVTKHEK AHNHELCTLD KSHLLRSHRR 120 VGNNQLSYLR DLKKSGVALA DVIRRRQCNE SDFFNFEVDG DARLTSFFWR DEQMRRDYEL 180 FGDFHGCFHL SSVYNITTSS LHMAYRYSKK HIKTLRNNKD FMDLFNCLLK YTDIEVEFEL 240 YWSRSKENGE DFRCAQGMPS LMMDDVKFLS HAREVYTIEI YYLFEEQFLK ARQCCEEAFE 300 SAKKSVETEV GYVHIEESDV SSSSGIVQDP SSRRLKGERN KRRSSIIILK RNLLADLKAF 360 TATLNRDIGS SSSMPSASDT VPDAAGDYLR QRQLRTQKVP TNCVYGICAW STPDAKKSKT 420 PDANAPFCTS D

Sequence ? help Back to Top

Protein Sequence Length: 431 aa Download sequence Send to blast

CAVDQDLVGI VVSNGDEAYE LYNDYAYRVG FSVRKGKQRY QGSTKNVKMK TFLCSKAGRK  60
SKENICVKAY SKIDLRTGCG AFVQFDVDGN GVGTVTKHEK AHNHELCTLD KSHLLRSHRR  120
VGNNQLSYLR DLKKSGVALA DVIRRRQCNE SDFFNFEVDG DARLTSFFWR DEQMRRDYEL  180
FGDFHGCFHL SSVYNITTSS LHMAYRYSKK HIKTLRNNKD FMDLFNCLLK YTDIEVEFEL  240
YWSRSKENGE DFRCAQGMPS LMMDDVKFLS HAREVYTIEI YYLFEEQFLK ARQCCEEAFE  300
SAKKSVETEV GYVHIEESDV SSSSGIVQDP SSRRLKGERN KRRSSIIILK RNLLADLKAF  360
TATLNRDIGS SSSMPSASDT VPDAAGDYLR QRQLRTQKVP TNCVYGICAW STPDAKKSKT  420
PDANAPFCTS D

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019168946.1	4e-99	PREDICTED: protein FAR1-RELATED SEQUENCE 7-like

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA14143	2	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-10	FAR1-related sequence 5