PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc002733.1_g00003.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB
Protein Properties Length: 318aa    MW: 35187.4 Da    PI: 7.077
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc002733.1_g00003.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.56.6e-181461148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             +g+WT+eEde+l+d +k+ G g+W++ ++  g+ R++k+c++rw +yl
  Itr_sc002733.1_g00003.1 14 KGPWTPEEDEKLIDFIKKNGQGSWRSLPKLAGLLRCGKSCRLRWTNYL 61
                             79******************************99************97 PP
2Myb_DNA-binding47.44.6e-1567112148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                              rg+++ eE++l ++++  lG++ W++Ia+ ++ gRt++++k+ w+++l
  Itr_sc002733.1_g00003.1  67 RGPFSSEEEKLVIQLHGILGNR-WAAIASQLP-GRTDNEIKNLWNTHL 112
                              89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-24564IPR009057Homeodomain-like
PROSITE profilePS5129425.161965IPR017930Myb domain
SuperFamilySSF466895.35E-3011108IPR009057Homeodomain-like
SMARTSM007171.7E-141363IPR001005SANT/Myb domain
PfamPF002492.6E-161461IPR001005SANT/Myb domain
CDDcd001671.19E-111661No hitNo description
Gene3DG3DSA:1.10.10.604.0E-2565116IPR009057Homeodomain-like
SMARTSM007176.0E-1466114IPR001005SANT/Myb domain
PROSITE profilePS5129419.45266116IPR017930Myb domain
PfamPF002497.2E-1467112IPR001005SANT/Myb domain
CDDcd001672.42E-1069112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0009909Biological Processregulation of flower development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MGRTPCCDKK GLKKGPWTPE EDEKLIDFIK KNGQGSWRSL PKLAGLLRCG KSCRLRWTNY  60
LRPDIKRGPF SSEEEKLVIQ LHGILGNRWA AIASQLPGRT DNEIKNLWNT HLKKRLLSMG  120
IDPQTHEPSS ESNGPQRRLP TTPSARHMAQ WESARLEAEA RLSRESKLLV PSTIGGSEAD  180
FFLRIWNSEI GEAFRKLKKG VKFACQSPIS QASSSTKYGS ASGTTTEMDI TLAGSADAGG  240
NPNEDPEGKS NRSYTDDPLQ GSETSCSNEL EDSSESALQL LLDFPTYNDM SFLGHNDTYS  300
IYPAFLTEST LNCSSAEH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-31121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00114ampDAPTransfer from AT3G61250Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019176249.10.0PREDICTED: myb-related protein 308-like
RefseqXP_019176250.10.0PREDICTED: myb-related protein 308-like
RefseqXP_019176251.10.0PREDICTED: myb-related protein 308-like
RefseqXP_019176252.10.0PREDICTED: myb-related protein 308-like
SwissprotQ9M2D91e-124MYB17_ARATH; Transcription factor MYB17
TrEMBLA0A328DTF40.0A0A328DTF4_9ASTE; Uncharacterized protein
TrEMBLA0A484MCJ60.0A0A484MCJ6_9ASTE; Uncharacterized protein
STRINGSolyc01g094360.2.11e-176(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.11e-127myb domain protein 17