PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc002720.1_g00002.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB
Protein Properties Length: 360aa    MW: 39212.2 Da    PI: 6.7601
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc002720.1_g00002.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.68.1e-154087148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             +g W++eEde+l ++    G g+W+ +ar  g+ R++k+c++rw +yl
  Itr_sc002720.1_g00002.1 40 KGLWSPEEDEKLMHYMLSNGQGCWSEVARNAGLQRCGKSCRLRWINYL 87
                             678*******************************************97 PP
2Myb_DNA-binding52.79.7e-1793137147
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                              rg+++++E+el+++++ +lG++ W+ Ia++++ gRt++++k++w++ 
  Itr_sc002720.1_g00002.1  93 RGAFSPQEEELIIHLHSLLGNR-WSQIAARLP-GRTDNEIKNFWNST 137
                              89********************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.7313587IPR017930Myb domain
SuperFamilySSF466898.36E-2838134IPR009057Homeodomain-like
SMARTSM007171.1E-103989IPR001005SANT/Myb domain
PfamPF002492.3E-134087IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.8E-234194IPR009057Homeodomain-like
CDDcd001675.84E-94387No hitNo description
PROSITE profilePS5129426.07588142IPR017930Myb domain
SMARTSM007171.7E-1692140IPR001005SANT/Myb domain
PfamPF002491.6E-1593137IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-2695143IPR009057Homeodomain-like
CDDcd001672.14E-1195138No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MRKPEFSSGK NGANVGNSNI NGNNNSSGSN NVVVANKLRK GLWSPEEDEK LMHYMLSNGQ  60
GCWSEVARNA GLQRCGKSCR LRWINYLRPD LKRGAFSPQE EELIIHLHSL LGNRWSQIAA  120
RLPGRTDNEI KNFWNSTLKK RMKNTSSSPS TTTSPNTSDS SSLEPCMGGL ISSSSSSMQD  180
HHHNHHHALM SSIYMHDPSS SSSSSSSFSS SLPLSAAAAD PLPMLGHSIS AAASYMETGH  240
ALGGGGAYYG DHGIFGGNIG AEEGPNHLFM VPPLESVKSE GFVSRMSIHN TTNPSHNNNN  300
NINTNNIDIN NHFMNNNNNV KVENVGGGFG SYWDNGGEWD LEELMKDVPN SFPFLDFQVE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-27381425108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019163813.11e-146PREDICTED: transcription factor MYB86-like
TrEMBLA0A314KX171e-105A0A314KX17_NICAT; Transcription factor myb46
STRINGXP_009765231.11e-104(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12870.11e-58myb domain protein 46