PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc002712.1_g00002.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 786aa MW: 89954.5 Da PI: 6.3613

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc002712.1_g00002.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	102.2	5.3e-32	79	170	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 fYn+YA++vGFs+r+s+s++s+++g i++r fvCskeg+r+ ++k+ +++ +r+r+ tr+gCka l vk +++gkw+v+++++eH Itr_sc002712.1_g00002.1 79 FYNSYARRVGFSTRVSSSRRSRKDGAIIQRSFVCSKEGFRNLNEKRtkDREIKRPRTITRVGCKAALSVKIQDSGKWVVSNFVKEH 164 9*************************************998888545677889*************************** PP FAR1 86 nHelap 91 nHel+p Itr_sc002712.1_g00002.1 165 NHELVP 170 **86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.2E-30	79	170	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.6E-32	291	383	IPR018289	MULE transposase domain
Pfam	PF04434	5.7E-12	559	605	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	11.041	571	607	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.2E-9	582	609	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 786 aa Download sequence Send to blast
MENEVIEFDI GIGGGGGSED GDGDVILENM DDAETMPNCS PAHSSDALIV SGIYTPTGDL 60 DLEPFDGMEF ESEEAAKAFY NSYARRVGFS TRVSSSRRSR KDGAIIQRSF VCSKEGFRNL 120 NEKRTKDREI KRPRTITRVG CKAALSVKIQ DSGKWVVSNF VKEHNHELVP PDQVHCLRSH 180 RQISGPAKTL IDTLQAAGMG PRRIMSALIK EYGGISKVGF TEVDCRNYMR NNRQRSLEGD 240 TQLLLDYLRQ MHAENPDFFY AVQGDEDQCT GNVFWADHKA RANYNYFGDT VTFDTTYRSN 300 RYRLPFAPFT GINHHGQPVL FGCAFLINES EASFIWLFKT WLAAMFGNPP VSITTDHDEV 360 IRSAIMQVFP ESRHRFCKWH IFKKCQEKLS HVFLKYPNFE ADFHKCVNLT ESTEEYESCW 420 FSLVSKYELR DHDWLQAIYS DRRHWVPVYL RDTFFAEMSI TQHSDSMNSY FDGYVNASTN 480 LNQFFKLYEK ALDSRHEKEV KADYDTMNTL PALKTPSPME KQASEVYTRK IFMRFQEELV 540 GTLTFMATKV EDEGGVTIYQ VAKFGEDHKA YCVRFNVLEM KATCSCQMFE FSGLLCRHVL 600 AVFRVTNVLT LPSHYILKRW TRNAKSTVTL EERVADAFSG YLESHTVRYN MLRHEAFKFV 660 EDGAESVSSY VVAMAALGEA SKKVSLAAKH DGKISLLNGR NQDDSISDGI QENLNIEDQH 720 GTFTKLLSED DVDRKIHELT CELDCASRRC EVYRVNLLSV LKDIEDHKQQ LSIKVQNIKI 780 SMKDDL

Sequence ? help Back to Top

Protein Sequence Length: 786 aa Download sequence Send to blast

MENEVIEFDI GIGGGGGSED GDGDVILENM DDAETMPNCS PAHSSDALIV SGIYTPTGDL  60
DLEPFDGMEF ESEEAAKAFY NSYARRVGFS TRVSSSRRSR KDGAIIQRSF VCSKEGFRNL  120
NEKRTKDREI KRPRTITRVG CKAALSVKIQ DSGKWVVSNF VKEHNHELVP PDQVHCLRSH  180
RQISGPAKTL IDTLQAAGMG PRRIMSALIK EYGGISKVGF TEVDCRNYMR NNRQRSLEGD  240
TQLLLDYLRQ MHAENPDFFY AVQGDEDQCT GNVFWADHKA RANYNYFGDT VTFDTTYRSN  300
RYRLPFAPFT GINHHGQPVL FGCAFLINES EASFIWLFKT WLAAMFGNPP VSITTDHDEV  360
IRSAIMQVFP ESRHRFCKWH IFKKCQEKLS HVFLKYPNFE ADFHKCVNLT ESTEEYESCW  420
FSLVSKYELR DHDWLQAIYS DRRHWVPVYL RDTFFAEMSI TQHSDSMNSY FDGYVNASTN  480
LNQFFKLYEK ALDSRHEKEV KADYDTMNTL PALKTPSPME KQASEVYTRK IFMRFQEELV  540
GTLTFMATKV EDEGGVTIYQ VAKFGEDHKA YCVRFNVLEM KATCSCQMFE FSGLLCRHVL  600
AVFRVTNVLT LPSHYILKRW TRNAKSTVTL EERVADAFSG YLESHTVRYN MLRHEAFKFV  660
EDGAESVSSY VVAMAALGEA SKKVSLAAKH DGKISLLNGR NQDDSISDGI QENLNIEDQH  720
GTFTKLLSED DVDRKIHELT CELDCASRRC EVYRVNLLSV LKDIEDHKQQ LSIKVQNIKI  780
SMKDDL

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019195865.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X1
Refseq	XP_019195869.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X1
Refseq	XP_019195874.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X1
Swissprot	Q9SZL8	0.0	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A484MPS3	0.0	A0A484MPS3_9ASTE; Uncharacterized protein
STRING	XP_009758605.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA435	22	109

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	0.0	FAR1-related sequence 5

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]