PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc002692.1_g00001.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

NAC

Protein Properties

Length: 360aa MW: 40880 Da PI: 7.2436

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc002692.1_g00001.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	159.7	1.1e-49	44	169	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 +pGfrFhPt+eelv +yL++kvegk++++ e i+ +d+y+++Pw+Lp+ ++ +ekew+f+++rd+ky++g+r+nr+t+sgyWkatg Itr_sc002692.1_g00001.1 44 MPGFRFHPTEEELVEFYLRRKVEGKPFNV-ELITFLDLYRYDPWELPALAAIGEKEWFFYVPRDRKYRNGDRPNRVTTSGYWKATG 128 79*************************.89***********8778899**************************** PP NAM 88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 d+ + s++ + +glkktLvfy+g+apkg +t+W+m+eyrl Itr_sc002692.1_g00001.1 129 ADRMIRSENFRSIGLKKTLVFYTGKAPKGIRTSWIMNEYRL 169 *************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.14E-56	42	189	IPR003441	NAC domain
PROSITE profile	PS51005	55.822	43	190	IPR003441	NAC domain
Pfam	PF02365	6.0E-25	45	169	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence Send to blast
MAIVPSRMSQ QDESSNTTNN NNNNHRRHEE DDEETDDHEH DVVMPGFRFH PTEEELVEFY 60 LRRKVEGKPF NVELITFLDL YRYDPWELPA LAAIGEKEWF FYVPRDRKYR NGDRPNRVTT 120 SGYWKATGAD RMIRSENFRS IGLKKTLVFY TGKAPKGIRT SWIMNEYRLP HHDTERLQKA 180 EISLCRVYKR AGVEDHPSLP RSLPTARATP SACRPPPHAA KKPPHHSLPP FEFPRTTANM 240 EAAATSLVLS QPTNSMNSYT PAPPAPPLAA VVASEEEKLL LTSPVVFPGG SSSPAAPFAD 300 DLHRLVNLHQ AATPQHFLTP QFSPLQLQPP LTFPDRLWDW SSLAPPPEQN KDYGASNPFK

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence Send to blast

MAIVPSRMSQ QDESSNTTNN NNNNHRRHEE DDEETDDHEH DVVMPGFRFH PTEEELVEFY  60
LRRKVEGKPF NVELITFLDL YRYDPWELPA LAAIGEKEWF FYVPRDRKYR NGDRPNRVTT  120
SGYWKATGAD RMIRSENFRS IGLKKTLVFY TGKAPKGIRT SWIMNEYRLP HHDTERLQKA  180
EISLCRVYKR AGVEDHPSLP RSLPTARATP SACRPPPHAA KKPPHHSLPP FEFPRTTANM  240
EAAATSLVLS QPTNSMNSYT PAPPAPPLAA VVASEEEKLL LTSPVVFPGG SSSPAAPFAD  300
DLHRLVNLHQ AATPQHFLTP QFSPLQLQPP LTFPDRLWDW SSLAPPPEQN KDYGASNPFK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-55	33	190	7	165	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-55	33	190	7	165	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-55	33	190	7	165	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-55	33	190	7	165	NO APICAL MERISTEM PROTEIN
3swm_A	4e-55	33	190	10	168	NAC domain-containing protein 19
3swm_B	4e-55	33	190	10	168	NAC domain-containing protein 19
3swm_C	4e-55	33	190	10	168	NAC domain-containing protein 19
3swm_D	4e-55	33	190	10	168	NAC domain-containing protein 19
3swp_A	4e-55	33	190	10	168	NAC domain-containing protein 19
3swp_B	4e-55	33	190	10	168	NAC domain-containing protein 19
3swp_C	4e-55	33	190	10	168	NAC domain-containing protein 19
3swp_D	4e-55	33	190	10	168	NAC domain-containing protein 19
4dul_A	4e-55	33	190	7	165	NAC domain-containing protein 19
4dul_B	4e-55	33	190	7	165	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269\|PubMed:17653269}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269\|PubMed:17653269}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019176841.1	0.0	PREDICTED: NAC domain-containing protein 35-like
Swissprot	Q9ZVP8	1e-110	NAC35_ARATH; NAC domain-containing protein 35
TrEMBL	A0A0M5JHG9	1e-138	A0A0M5JHG9_MANES; NAC transcription factors 10
STRING	cassava4.1_009166m	1e-138	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3888	24	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02450.1	1e-110	NAC domain containing protein 35

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Okajima K Molecular mechanism of phototropin light signaling. J. Plant Res., 2016. 129(2): p. 149-57 [PMID:26815763] Nakasone Y,Ohshima M,Okajima K,Tokutomi S,Terazima M Photoreaction Dynamics of LOV1 and LOV2 of Phototropin from Chlamydomonas reinhardtii. J Phys Chem B, 2018. 122(6): p. 1801-1815 [PMID:29355019]