PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc002683.1_g00008.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C3H
Protein Properties Length: 322aa    MW: 35981.2 Da    PI: 7.7287
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc002683.1_g00008.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.55.3e-09104124526
                              --SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                               C+ f++ G C++Gd+C FaHg
  Itr_sc002683.1_g00008.1 104 VCSEFRK-GKCSRGDNCEFAHG 124
                              7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.1E-599125IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-599127IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.366100126IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.8E-6103125IPR000571Zinc finger, CCCH-type
PfamPF006427.3E-7104124IPR000571Zinc finger, CCCH-type
SMARTSM003565.2134157IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.427134158IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010187Biological Processnegative regulation of seed germination
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MAELDVSPRK ILSRRGAADG DGYLDSPTKI EGGIFQKFLP YNNGEDEDED GDDPYSADHF  60
RMYEFKVRRC TRSRSHDWTD CPFAHPGEKA RRRDPRKFHY SGTVCSEFRK GKCSRGDNCE  120
FAHGVFESWL HPARYRTEAC KDGRNCKRKV CFFAHSPRQL RILPVSRYQT GSLSPPVNDP  180
AARYCHSPTS TLVGFSHASS PPLSPAAKTP FCRYGMTAAQ LIEMMSYKEA LTELVNSLEA  240
MNVEQQVNLN PPLSPATITR MTRPVSGTDP THFSLSNSPS TPGGHSSGSE FLTPQRSWTA  300
FSDNRDGGLT GIDLDWVNDL LT
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription repressor that functions as negative regulator of phytochrome-mediated promotion of seed germination. Inhibits seed germination by regulating the expression of gibberellic acid (GA) and abscisic acid (ABA) metabolic genes. Does not regulate the expression of the DELLA genes RGA and RGA1. Activated by PIL5, a phytochrome-interacting basic helix-loop-helix transcription factor. {ECO:0000269|PubMed:18487351}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019159022.10.0PREDICTED: zinc finger CCCH domain-containing protein 2-like
SwissprotQ9ZWA11e-81C3H2_ARATH; Zinc finger CCCH domain-containing protein 2
TrEMBLA0A068V4M81e-109A0A068V4M8_COFCA; Uncharacterized protein
STRINGXP_009789499.11e-103(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA105952125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03790.11e-77C3H family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chang G, et al.
    AFP2 as the novel regulator breaks high-temperature-induced seeds secondary dormancy through ABI5 and SOM in Arabidopsis thaliana.
    Biochem. Biophys. Res. Commun., 2018. 501(1): p. 232-238
    [PMID:29723526]