PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc002683.1_g00007.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 225aa    MW: 24267.1 Da    PI: 9.807
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc002683.1_g00007.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.42.4e-202575256
                      AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                             +y+GVr ++ +gr++AeIrdp    k+ r++lg+f+taeeAa+a++aa+++++g+
  Itr_sc002683.1_g00007.1 25 HYRGVRKRP-WGRYAAEIRDPA---KKSRVWLGTFDTAEEAARAYDAAAREFRGA 75
                             6********.**********83...36*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.75E-222582IPR016177DNA-binding domain
PfamPF008478.8E-142574IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.0E-322582IPR001471AP2/ERF domain
SMARTSM003801.3E-372588IPR001471AP2/ERF domain
CDDcd000184.45E-182581No hitNo description
PROSITE profilePS5103223.8022582IPR001471AP2/ERF domain
PRINTSPR003671.4E-112637IPR001471AP2/ERF domain
PRINTSPR003671.4E-114864IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MAVKGREEGG VKGGAGKVNG IKEVHYRGVR KRPWGRYAAE IRDPAKKSRV WLGTFDTAEE  60
AARAYDAAAR EFRGAKAKTN FHSPSENHSP SQSSTVESSG SETTGHAPQF PLELDLTRRL  120
GSAEAAGVRS VNNNNNTFQF FHPQPAVAVL PNGQPVLLFE TLWRPGAVSR PLPDQFEAAP  180
AIPSKRPALS DSSTFSVVEE NHFVGAGVAE KRLNLDLNLA PPTEA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-212581259ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A8e-212281262ATERF1
3gcc_A8e-212281262ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional repressor and may regulate other AtERFs (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly and quickly induced by ethylene. {ECO:0000269|PubMed:10945353}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019159024.11e-122PREDICTED: ethylene-responsive transcription factor 4-like
SwissprotQ9LW493e-81ERF4_NICSY; Ethylene-responsive transcription factor 4
TrEMBLA0A2H4I7741e-130A0A2H4I774_IPOBA; Ethylene response factor 4
STRINGXP_009772525.11e-79(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.12e-22erf domain protein 9