PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc002681.1_g00002.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

GRAS

Protein Properties

Length: 688aa MW: 75936.3 Da PI: 5.8828

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc002681.1_g00002.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	404.4	1.1e-123	302	673	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn...sseelaalkl 83 l++lL++c+ea+ ++++++++++ rl elasp+g p+ Rl+ayfteALa r+a ++++++++ pp++ ++ ++ +al+l Itr_sc002681.1_g00002.1 302 LITLLVACVEALGLKNFAAVNHCIGRLGELASPRGLPVSRLTAYFTEALALRVAWHWPHIFHITPPRDLDRPGlddDHNNGTALRL 387 5789************************************************************99987655556677789999 PP GRAS 84 fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfA 169 +++v+Pi+kf ++t N+ +l+ +eg++rvHiiDfdi+qGlQWp+L+q+LasR+++p ++RiTg+g+ sk+el etg+rL+ fA Itr_sc002681.1_g00002.1 388 LNQVTPIPKFIQFTSNEILLRVFEGKDRVHIIDFDIKQGLQWPSLFQSLASRANPPSHIRITGIGE----SKQELLETGDRLSGFA 469 **************************************************************....9*********** PP GRAS 170 eelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFle 255 e+l++ fef++ v++rled++l++L+vk+gE++aVn++lq+h++l ++ + ++L l++s++P vv++eqea+h+++s+ Itr_sc002681.1_g00002.1 470 EQLNLAFEFHP-VVDRLEDVRLWMLHVKEGESVAVNCMLQMHKVLYDTSGRAL--VDFLGLIRSTNPIAVVMAEQEAEHDESSLES 552 *******.7****************************77766655..89************************* PP GRAS 256 rflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaG.Fkpvplsekaakqakll 340 r++++l+yysa+fdsl+++lp +s r+k+E++ ++rei+n++aceg+er erh +++kWr+ l+e G F+ v ++e++ q ++l Itr_sc002681.1_g00002.1 553 RLVNSLKYYSAVFDSLDSSLPLDSPVRTKIEEM-FAREIRNIIACEGRERLERHASFGKWRKLLMEQGnFRCVGITERELLQSQML 637 *****************************.************************8766555************* PP GRAS 341 lrkvksdgyrveee..sgslvlgWkdrpLvsvSaWr 374 l++++++ y+ve++ ++ l+l W+d+pL++vSaW+ Itr_sc002681.1_g00002.1 638 LKMHSMESYKVEKQgeDDGLTLSWEDQPLYTVSAWT 673 ********7666999**************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	53.611	276	651	IPR005202	Transcription factor GRAS
Pfam	PF03514	4.0E-121	302	673	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 688 aa Download sequence Send to blast
MLAGCSSTLV SPRHRLRSEA SEQFQACHFP AMSTQRLDLP CSFIRKESSR AQAVRPVGLS 60 VEKPGEAKTS GCGLKQNIRL PPTPTAIQTP RFEGKRESWE WEKKSRCLKR YAAEQESCDE 120 GFVSRANKRK KGCGEEEDDE EEEKGHHGLS LGHLGSSSGG FWFQSGVGGG ANPNPSSQGP 180 FSLSSSGGDE ESVCFVPSEV RPPPLPLSHH PWLDSVVTEI TDFSDKNVVE TSQGPAKEAS 240 GSSTSSEGGG RGLLLRLHDN NPPPTSSDHE IGNGSRRPNP INAAASQAAV AGESEPNNGV 300 ELITLLVACV EALGLKNFAA VNHCIGRLGE LASPRGLPVS RLTAYFTEAL ALRVAWHWPH 360 IFHITPPRDL DRPGLDDDHN NGTALRLLNQ VTPIPKFIQF TSNEILLRVF EGKDRVHIID 420 FDIKQGLQWP SLFQSLASRA NPPSHIRITG IGESKQELLE TGDRLSGFAE QLNLAFEFHP 480 VVDRLEDVRL WMLHVKEGES VAVNCMLQMH KVLYDTSGRA LVDFLGLIRS TNPIAVVMAE 540 QEAEHDESSL ESRLVNSLKY YSAVFDSLDS SLPLDSPVRT KIEEMFAREI RNIIACEGRE 600 RLERHASFGK WRKLLMEQGN FRCVGITERE LLQSQMLLKM HSMESYKVEK QGEDDGLTLS 660 WEDQPLYTVS AWTPFDVAGS SSSYSQPS

Sequence ? help Back to Top

Protein Sequence Length: 688 aa Download sequence Send to blast

MLAGCSSTLV SPRHRLRSEA SEQFQACHFP AMSTQRLDLP CSFIRKESSR AQAVRPVGLS  60
VEKPGEAKTS GCGLKQNIRL PPTPTAIQTP RFEGKRESWE WEKKSRCLKR YAAEQESCDE  120
GFVSRANKRK KGCGEEEDDE EEEKGHHGLS LGHLGSSSGG FWFQSGVGGG ANPNPSSQGP  180
FSLSSSGGDE ESVCFVPSEV RPPPLPLSHH PWLDSVVTEI TDFSDKNVVE TSQGPAKEAS  240
GSSTSSEGGG RGLLLRLHDN NPPPTSSDHE IGNGSRRPNP INAAASQAAV AGESEPNNGV  300
ELITLLVACV EALGLKNFAA VNHCIGRLGE LASPRGLPVS RLTAYFTEAL ALRVAWHWPH  360
IFHITPPRDL DRPGLDDDHN NGTALRLLNQ VTPIPKFIQF TSNEILLRVF EGKDRVHIID  420
FDIKQGLQWP SLFQSLASRA NPPSHIRITG IGESKQELLE TGDRLSGFAE QLNLAFEFHP  480
VVDRLEDVRL WMLHVKEGES VAVNCMLQMH KVLYDTSGRA LVDFLGLIRS TNPIAVVMAE  540
QEAEHDESSL ESRLVNSLKY YSAVFDSLDS SLPLDSPVRT KIEEMFAREI RNIIACEGRE  600
RLERHASFGK WRKLLMEQGN FRCVGITERE LLQSQMLLKM HSMESYKVEK QGEDDGLTLS  660
WEDQPLYTVS AWTPFDVAGS SSSYSQPS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	2e-63	309	674	26	380	Protein SCARECROW
5b3h_A	2e-63	309	674	25	379	Protein SCARECROW
5b3h_D	2e-63	309	674	25	379	Protein SCARECROW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019179543.1	0.0	PREDICTED: scarecrow-like protein 28
Swissprot	Q9CAN3	0.0	SCL28_ARATH; Scarecrow-like protein 28
TrEMBL	A0A1S3ZYD3	0.0	A0A1S3ZYD3_TOBAC; scarecrow-like protein 28
STRING	XP_009609251.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5568	24	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G63100.1	1e-174	GRAS family protein