PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc002679.1_g00002.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

G2-like

Protein Properties

Length: 360aa MW: 39969.8 Da PI: 6.0677

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc002679.1_g00002.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	102.5	2.7e-32	199	254	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+peLH+rF++a++qLGGs+ AtPk+i+elmkv+gLt+++vkSHLQkYRl+ Itr_sc002679.1_g00002.1 199 KQRRCWSPELHRRFLQALQQLGGSHAATPKQIRELMKVDGLTNDEVKSHLQKYRLH 254 79****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.7E-29	196	257	IPR009057	Homeodomain-like
PROSITE profile	PS51294	14.875	196	256	IPR017930	Myb domain
SuperFamily	SSF46689	6.42E-19	197	257	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	8.1E-28	199	254	IPR006447	Myb domain, plants
Pfam	PF00249	6.9E-8	201	252	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence Send to blast
MLINFPEDNK TQRCRDYIQA LEEERRKIQV FRRELPLCLD LVTQAIESYK QQLSGTTTEY 60 NLNGQSECSE QTTSAAPVLE QFIPMKSAQE DDEEDYEEQS HKSDNDNDDD HHDYVDNNSE 120 KSDWLRSVQL WNQFPDPTPK EESPAPEEVK RNGSGGAFQP FKKEKSGAAA AAQPPTAASS 180 TAETGRSKKE DKESQSQRKQ RRCWSPELHR RFLQALQQLG GSHAATPKQI RELMKVDGLT 240 NDEVKSHLQK YRLHTRRPSP SNRNNSIQQQ AAPQFVVVGG IWVPPAEYAA MAAAPAPAAS 300 KEATTSNGIY APVASLPPSS AFQDPLASNR RSCGSHERGS QSNSPATSSS THTTTASPPY

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence Send to blast

MLINFPEDNK TQRCRDYIQA LEEERRKIQV FRRELPLCLD LVTQAIESYK QQLSGTTTEY  60
NLNGQSECSE QTTSAAPVLE QFIPMKSAQE DDEEDYEEQS HKSDNDNDDD HHDYVDNNSE  120
KSDWLRSVQL WNQFPDPTPK EESPAPEEVK RNGSGGAFQP FKKEKSGAAA AAQPPTAASS  180
TAETGRSKKE DKESQSQRKQ RRCWSPELHR RFLQALQQLG GSHAATPKQI RELMKVDGLT  240
NDEVKSHLQK YRLHTRRPSP SNRNNSIQQQ AAPQFVVVGG IWVPPAEYAA MAAAPAPAAS  300
KEATTSNGIY APVASLPPSS AFQDPLASNR RSCGSHERGS QSNSPATSSS THTTTASPPY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-13	199	252	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-13	199	252	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	2e-13	199	252	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-13	199	252	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-13	199	252	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-13	199	252	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-13	199	252	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-13	199	252	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-13	199	252	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-13	199	252	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-13	199	252	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-13	199	252	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in phosphate signaling in roots. {ECO:0000250\|UniProtKB:Q9FX67}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019168488.1	0.0	PREDICTED: myb family transcription factor EFM-like
Swissprot	Q9FPE8	1e-104	HHO3_ARATH; Transcription factor HHO3
TrEMBL	A0A2G9GW56	1e-139	A0A2G9GW56_9LAMI; Uncharacterized protein
TrEMBL	A0A2G9I1R6	1e-139	A0A2G9I1R6_9LAMI; Uncharacterized protein
STRING	VIT_01s0011g03110.t01	1e-135	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5219	24	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25550.1	5e-94	G2-like family protein

Publications ? help Back to Top
Nagarajan VK,Satheesh V,Poling MD,Raghothama KG,Jain A Arabidopsis MYB-Related HHO2 Exerts a Regulatory Influence on a Subset of Root Traits and Genes Governing Phosphate Homeostasis. Plant Cell Physiol., 2016. 57(6): p. 1142-52 [PMID:27016098]