PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc002673.1_g00002.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB
Protein Properties Length: 429aa    MW: 47703.6 Da    PI: 6.2483
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc002673.1_g00002.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.21.7e-17145191148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                              +g W++eEd  l+++vkq+G + W+ +a+ m  gR +kqc++rwq++l
  Itr_sc002673.1_g00002.1 145 KGQWSEEEDRNLIRLVKQYGVRKWAQVAENMA-GRAGKQCRERWQNHL 191
                              799*****************************.*************97 PP
2Myb_DNA-binding57.33.5e-18197239145
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                              +++W++eE+  l++a+++lG++ W+ Ia++++ gRt++++k++w+
  Itr_sc002673.1_g00002.1 197 KDSWSEEEERVLIEAHEELGNR-WAEIAKRIP-GRTENSIKNHWN 239
                              679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129427.155140195IPR017930Myb domain
SMARTSM007176.2E-17144193IPR001005SANT/Myb domain
SuperFamilySSF466893.38E-30144238IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.8E-26146198IPR009057Homeodomain-like
PfamPF139211.9E-18148205No hitNo description
CDDcd001671.20E-15148191No hitNo description
PROSITE profilePS5129421.757196246IPR017930Myb domain
SMARTSM007171.6E-17196244IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.5E-22199244IPR009057Homeodomain-like
CDDcd001672.30E-14199242No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MEDSGGGGGG FGYTNLQNGH HFRSGPRLPL DRFLWAHNRQ NQVISSQQQV PNVVENRSET  60
MLFPENRFFD YSPVIVGEHS RSHAASSTLV GGAAASWPIP QEVSFYDAAT FVHGVDRSAV  120
VGNNVNESPA RQANSRSSSS TLLIKGQWSE EEDRNLIRLV KQYGVRKWAQ VAENMAGRAG  180
KQCRERWQNH LRPDIKKDSW SEEEERVLIE AHEELGNRWA EIAKRIPGRT ENSIKNHWNA  240
TKRRQNSRRR IKKVKDNNNE SNTVNKSTVL QDYIKAKFPK VDSGAGAGVS ESPSIQTDQI  300
LSPPAGEDDD SSSLLMQEAY HDEDMSFMES LFGNTTPYPT IMAADHPDNL NKHNEEPIPA  360
PPDRYLAYLL EGATSSSSLM ECTMMNQVGS YGYPSLSSGT TSKAKDIDLM ELIFSSPSQS  420
SQGSNNNAN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C1e-441422451104C-Myb DNA-Binding Domain
1msf_C1e-441422451104C-Myb DNA-Binding Domain
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for female gametophyte fertility. Acts redundantly with MYB64 to initiate the FG5 transition during female gametophyte development. The FG5 transition represents the switch between free nuclear divisions and cellularization-differentiation in female gametophyte, and occurs during developmental stage FG5. {ECO:0000269|PubMed:24068955}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00567DAPTransfer from AT5G58850Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019186551.10.0PREDICTED: transcription factor MYB108-like
SwissprotQ9FIM44e-68MY119_ARATH; Transcription factor MYB119
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA48251941
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58850.13e-69myb domain protein 119
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]