PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc002639.1_g00005.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C2H2

Protein Properties

Length: 440aa MW: 47023.4 Da PI: 9.5456

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc002639.1_g00005.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.9	3.8e-05	204	226	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C++Cg+ Fs ++ ++H + H Itr_sc002639.1_g00005.1 204 TCHKCGEQFSKWDAVESHHLSqH 226 8*****************99877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00028	0	205	226	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	2.11E-24	228	439	No hit	No description
Gene3D	G3DSA:3.90.228.10	1.8E-12	233	437	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 440 aa Download sequence Send to blast
MPAAVWFSLK KSLNCRSEVG EVHDPNYGGG RNLGKISTST RKSTTIRSGC SRSIANLKDV 60 VIHGSKRHTE NPQLQSPRSI GSSELLNPIV HEVVLNNSTC ELKITSYPFQ DGGGNGCGGA 120 SGGGGGSGSP FVGTLKPGTP GPGGHQVAPS KRPGGLGSPM RIGSSGSLSK RTGSGFGGIV 180 VRPRPRPRPK PNCGGDYNGF QALTCHKCGE QFSKWDAVES HHLSQHAVTQ LVEGDSSRNI 240 VEMICRTSWA TKSDNTNNCN GIERILKVHN MQKTLAEFEE YRERVKIKAS KLAKKHARCL 300 ADGNELLRFH GTTVECNLGA NDSSSLCTSE KCNVCQILRR GFAIKKEING GVGVFTASTS 360 NRALETIETS CGNQAKRKAL IVCRVIAGRV HRPLENVEEL AGQSGFDSLA GKVGLYSNVE 420 ELFLLDPRAL LPCFVVICKA

Sequence ? help Back to Top

Protein Sequence Length: 440 aa Download sequence Send to blast

MPAAVWFSLK KSLNCRSEVG EVHDPNYGGG RNLGKISTST RKSTTIRSGC SRSIANLKDV  60
VIHGSKRHTE NPQLQSPRSI GSSELLNPIV HEVVLNNSTC ELKITSYPFQ DGGGNGCGGA  120
SGGGGGSGSP FVGTLKPGTP GPGGHQVAPS KRPGGLGSPM RIGSSGSLSK RTGSGFGGIV  180
VRPRPRPRPK PNCGGDYNGF QALTCHKCGE QFSKWDAVES HHLSQHAVTQ LVEGDSSRNI  240
VEMICRTSWA TKSDNTNNCN GIERILKVHN MQKTLAEFEE YRERVKIKAS KLAKKHARCL  300
ADGNELLRFH GTTVECNLGA NDSSSLCTSE KCNVCQILRR GFAIKKEING GVGVFTASTS  360
NRALETIETS CGNQAKRKAL IVCRVIAGRV HRPLENVEEL AGQSGFDSLA GKVGLYSNVE  420
ELFLLDPRAL LPCFVVICKA

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019171895.1	0.0	PREDICTED: uncharacterized protein LOC109167316
Refseq	XP_019171896.1	0.0	PREDICTED: uncharacterized protein LOC109167316
TrEMBL	A0A1J6KEA0	0.0	A0A1J6KEA0_NICAT; Uncharacterized protein
STRING	PGSC0003DMT400055929	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2244	22	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27240.1	1e-147	C2H2 family protein