PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc002632.1_g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | LBD | ||||||||
Protein Properties | Length: 238aa MW: 26041.7 Da PI: 8.5836 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 89.7 | 3.7e-28 | 4 | 107 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvil 81 +C++C+vlr++C+++C ++p++ p++q++++ +++k++G++ +l+ll+a+p+ r+++++sl+yeA r+ +P G++g+++ Itr_sc002632.1_g00002.1 4 SCNGCRVLRKGCSQNCSIRPCLqwiksPESQANATLFLAKFYGRAGLLNLLNAAPDRLRPEVFKSLLYEASGRIVNPLFGSTGLLS 89 6************************************************************************************* PP DUF260 82 klqqqleqlkaelallke 99 +++++l+q++++++l ++ Itr_sc002632.1_g00002.1 90 TGNWELCQKAVDAVLKGA 107 **********99988765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 16.322 | 3 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.5E-22 | 4 | 102 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MRMSCNGCRV LRKGCSQNCS IRPCLQWIKS PESQANATLF LAKFYGRAGL LNLLNAAPDR 60 LRPEVFKSLL YEASGRIVNP LFGSTGLLST GNWELCQKAV DAVLKGAPIT PVASDASAAA 120 VLPLKACDIG HVHYKEGNRG KSGDLHRVRN RGRFKRAGAK IKENSVLTGS SDEEMNRSTS 180 HESSLCHQSP AANEEPESRE IQRLNSVEIS QPALDVRHVD FDDEIELELT LGFAPKVK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019173178.1 | 1e-156 | PREDICTED: LOB domain-containing protein 40-like | ||||
Swissprot | Q9M886 | 1e-72 | LBD41_ARATH; LOB domain-containing protein 41 | ||||
TrEMBL | A0A1S3XA61 | 2e-97 | A0A1S3XA61_TOBAC; LOB domain-containing protein 41-like | ||||
STRING | XP_009607764.1 | 3e-97 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA886 | 24 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02550.1 | 4e-69 | LOB domain-containing protein 41 |