PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc002567.1_g00003.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

NAC

Protein Properties

Length: 750aa MW: 82819.9 Da PI: 3.9818

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc002567.1_g00003.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	54.2	4.8e-17	20	156	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk..leleevikevdiykv.ePwdLpkkvkaeekewyfFskrdkkya..tgkrknra..... 77 p G+ F+P d +lv ++L + v+g++ ++e i++ di+ ePw+L ++ +e+ yf +k +kk++ tg r +r+ Itr_sc002567.1_g00003.1 20 PLGLFFQPFDYDLV-RFLFEFVTGTNnsADEEGLIHKEDIFGDkEPWELI-RYGPSENMAYFLTKLKKKSKskTGCRVERTvgkkv 103 7899********.8999999998833344446*9865497.66667788899998777766336779999767776 PP NAM 78 ..tksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 k g W+ + k k+v+++ ++ ++g k+ +v+ + ++p+ + +W+m+e++l Itr_sc002567.1_g00003.1 104 kgKKPGNWHGQDKGKPVFDEkGKYVMGYKRCFVYKNRTEPE-QDGQWLMKEFSL 156 666699********98455569***99766666.8*******97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.97E-19	11	185	IPR003441	NAC domain
PROSITE profile	PS51005	22.873	19	185	IPR003441	NAC domain
Pfam	PF02365	1.3E-8	21	156	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 750 aa Download sequence Send to blast
MLAALPDRNQ PACVMEMEIP LGLFFQPFDY DLVRFLFEFV TGTNNSADEE GLIHKEDIFG 60 DKEPWELIRY GPSENMAYFL TKLKKKSKSK TGCRVERTVG KKVKGKKPGN WHGQDKGKPV 120 FDEKGKYVMG YKRCFVYKNR TEPEQDGQWL MKEFSLPETI VKKARAAYPI VEERKDFVLC 180 RVERKKDDEE DEDEDDEKTT LEKGGKDLEV ETTSPPIITP SLSPSPSPSP VADDDINSNL 240 IGVPVEETLA LTKDDMNLFL ASLAAAADTD GGHDHNISSY FDGIPVPAPV PMGDTDIISS 300 YLDDVPVPVH VPVGDTNIIS SYLDGVPVPV PVPVGDTDII SSYLDGVPVP VPVPAGDTDI 360 SSYFDSVPVL VPVGDTDIIS SYLDGVPVPV PVGDTDIISS YLDGVPVPVP AGDTDISSYF 420 DGVPVPVPVG DTNLSSYLDG VPVPVPAGDT DMNSYLVDVP METLIVPGET SAQADRDQDH 480 HMRPDVAVET FPEPGSSSFM DFIFNMEDVT RKNSKSMGDS SVVPQLSTID AFNCKKQLAG 540 NGKLWPEEEE IVFLRSLGWE ENGDDYDGDE EEGYLTQEEF ATLSATTNGG DAFDCKKQLA 600 GNGKLWPEDE EIAFLRSLGW EENGDDYDDD EEEGYITQEE FVTLSDEEEG YITQEEFVTL 660 SATTNGGDAF NCKKQLGNHE LCLEEEEIAF LRSLGWEESG DEDDEEGALT EEEIATFYTY 720 VSNHILHLKP KPALRFTRLH HNTAVFSFFH

Sequence ? help Back to Top

Protein Sequence Length: 750 aa Download sequence Send to blast

MLAALPDRNQ PACVMEMEIP LGLFFQPFDY DLVRFLFEFV TGTNNSADEE GLIHKEDIFG  60
DKEPWELIRY GPSENMAYFL TKLKKKSKSK TGCRVERTVG KKVKGKKPGN WHGQDKGKPV  120
FDEKGKYVMG YKRCFVYKNR TEPEQDGQWL MKEFSLPETI VKKARAAYPI VEERKDFVLC  180
RVERKKDDEE DEDEDDEKTT LEKGGKDLEV ETTSPPIITP SLSPSPSPSP VADDDINSNL  240
IGVPVEETLA LTKDDMNLFL ASLAAAADTD GGHDHNISSY FDGIPVPAPV PMGDTDIISS  300
YLDDVPVPVH VPVGDTNIIS SYLDGVPVPV PVPVGDTDII SSYLDGVPVP VPVPAGDTDI  360
SSYFDSVPVL VPVGDTDIIS SYLDGVPVPV PVGDTDIISS YLDGVPVPVP AGDTDISSYF  420
DGVPVPVPVG DTNLSSYLDG VPVPVPAGDT DMNSYLVDVP METLIVPGET SAQADRDQDH  480
HMRPDVAVET FPEPGSSSFM DFIFNMEDVT RKNSKSMGDS SVVPQLSTID AFNCKKQLAG  540
NGKLWPEEEE IVFLRSLGWE ENGDDYDGDE EEGYLTQEEF ATLSATTNGG DAFDCKKQLA  600
GNGKLWPEDE EIAFLRSLGW EENGDDYDDD EEEGYITQEE FVTLSDEEEG YITQEEFVTL  660
SATTNGGDAF NCKKQLGNHE LCLEEEEIAF LRSLGWEESG DEDDEEGALT EEEIATFYTY  720
VSNHILHLKP KPALRFTRLH HNTAVFSFFH