PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc002538.1_g00003.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB
Protein Properties Length: 367aa    MW: 41325.1 Da    PI: 7.3955
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc002538.1_g00003.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.42.8e-171461148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             +g W++eEde+l++ ++ +G g+W+++++  g+ R++k+c++rw +yl
  Itr_sc002538.1_g00003.1 14 KGLWSPEEDEKLIKHITTYGHGCWSSVPKLAGLQRCGKSCRLRWINYL 61
                             678*******************************************97 PP
2Myb_DNA-binding46.39.7e-1567109145
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                              rg +++eE+ l++++++ lG++ W+ Ia++++ gRt++++k+ w+
  Itr_sc002538.1_g00003.1  67 RGTFSQEEENLIIELHAVLGNK-WSQIAARLP-GRTDNEIKNLWN 109
                              899*******************.*********.*********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.2E-27664IPR009057Homeodomain-like
PROSITE profilePS5129418.32961IPR017930Myb domain
SuperFamilySSF466894.6E-2912108IPR009057Homeodomain-like
SMARTSM007174.4E-131363IPR001005SANT/Myb domain
PfamPF002494.5E-151461IPR001005SANT/Myb domain
CDDcd001672.34E-111761No hitNo description
PROSITE profilePS5129424.9262116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.5E-2565116IPR009057Homeodomain-like
SMARTSM007174.2E-1366114IPR001005SANT/Myb domain
PfamPF002499.9E-1467109IPR001005SANT/Myb domain
CDDcd001671.82E-969109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MGRHSCCYKQ KLRKGLWSPE EDEKLIKHIT TYGHGCWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGTF SQEEENLIIE LHAVLGNKWS QIAARLPGRT DNEIKNLWNS SIKKKLRQKG  120
IDPNTHKPLS EVENEEKLVA SLTNNNNEKL TLSEGSSELN FVEAESCNNN NNNQVPSLAV  180
MDSYPMIDNP MSTNTPPTHH EFFLNKTPDL SGYLSFFNNN IGSSFPMQHP SNSSLFLNPK  240
SNVVLPMETN SSFFENNASF SWGPTTDHHH HCGGKPEKQS ADLDETKWSE YLQAPFYLQP  300
PPPPNHQDLY GEGKPETQFA TQGGSPLIPT TTSAATATAT TTWLQNQAMY NNSKNFQRLH  360
AAFGQFS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-28121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that coordinates a small network of downstream target genes required for several aspects of plant growth and development, such as xylem formation and xylem cell differentiation, and lateral root formation (PubMed:22708996). Regulates a specific set of target genes by binding DNA to the AC cis-element 5'-ACCTAC-3' (PubMed:23741471). Functions as a transcriptional regulator of stomatal closure. Plays a role the regulation of stomatal pore size independently of abscisic acid (ABA) (PubMed:16005292). Required for seed coat mucilage deposition during the development of the seed coat epidermis (PubMed:19401413). Involved in the induction of trichome initiation and branching by positively regulating GL1 and GL2. Required for gibberellin (GA) biosynthesis and degradation by positively affecting the expression of the enzymes that convert GA9 into the bioactive GA4, as well as the enzymes involved in the degradation of GA4 (PubMed:28207974). {ECO:0000269|PubMed:16005292, ECO:0000269|PubMed:19401413, ECO:0000269|PubMed:22708996, ECO:0000269|PubMed:23741471, ECO:0000269|PubMed:28207974}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019191031.10.0PREDICTED: transcription factor MYB86-like
SwissprotQ8VZQ25e-94MYB61_ARATH; Transcription factor MYB61
TrEMBLA0A484M8E91e-137A0A484M8E9_9ASTE; Uncharacterized protein
STRINGXP_009600845.11e-137(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09540.11e-90myb domain protein 61
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Matías-Hernández L, et al.
    AaMYB1 and its orthologue AtMYB61 affect terpene metabolism and trichome development in Artemisia annua and Arabidopsis thaliana.
    Plant J., 2017. 90(3): p. 520-534
    [PMID:28207974]