PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc002521.1_g00002.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

NAC

Protein Properties

Length: 257aa MW: 29398.6 Da PI: 6.6028

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc002521.1_g00002.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	101.5	1.1e-31	37	117	50	129
NAM 50 kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129 +k +++ewyfFs rd+kyatg r+nrat+sgyWkatgkd++v++ +++ vg++ktLvfyk+rap+g kt W+mhe+rle Itr_sc002521.1_g00002.1 37 VAKLNSSEWYFFSFRDRKYATGFRTNRATTSGYWKATGKDRTVIDPtTRAIVGMRKTLVFYKNRAPNGIKTGWIMHEFRLE 117 3445678************************************966777*************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	37.907	1	135	IPR003441	NAC domain
Pfam	PF02365	6.0E-16	30	116	IPR003441	NAC domain
SuperFamily	SSF101941	1.96E-39	32	135	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence Send to blast
MTYDDNLGQF FHCDPLSDRF TRKGLLNPRP RIVIEEVAKL NSSEWYFFSF RDRKYATGFR 60 TNRATTSGYW KATGKDRTVI DPTTRAIVGM RKTLVFYKNR APNGIKTGWI MHEFRLENPH 120 IPPKEDWVLC RVFHKSKTET NNEDNIMYDD IASGNLEVCL PSTAAYRPVA AAYSHSHSPP 180 NQTQTSSTAN FFTAAPADQR GFPQSSRHNT NVAPSSNDYE FLFDDMNFED HPSMQDGGVH 240 SSIEDMRFDD ENGLAFI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	6e-28	33	138	61	168	NO APICAL MERISTEM PROTEIN
1ut4_B	6e-28	33	138	61	168	NO APICAL MERISTEM PROTEIN
1ut7_A	6e-28	33	138	61	168	NO APICAL MERISTEM PROTEIN
1ut7_B	6e-28	33	138	61	168	NO APICAL MERISTEM PROTEIN
3swm_A	6e-28	33	138	64	171	NAC domain-containing protein 19
3swm_B	6e-28	33	138	64	171	NAC domain-containing protein 19
3swm_C	6e-28	33	138	64	171	NAC domain-containing protein 19
3swm_D	6e-28	33	138	64	171	NAC domain-containing protein 19
3swp_A	6e-28	33	138	64	171	NAC domain-containing protein 19
3swp_B	6e-28	33	138	64	171	NAC domain-containing protein 19
3swp_C	6e-28	33	138	64	171	NAC domain-containing protein 19
3swp_D	6e-28	33	138	64	171	NAC domain-containing protein 19
4dul_A	6e-28	33	138	61	168	NAC domain-containing protein 19
4dul_B	6e-28	33	138	61	168	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019188425.1	1e-146	PREDICTED: protein CUP-SHAPED COTYLEDON 3-like
TrEMBL	A0A1S3ZZ69	9e-87	A0A1S3ZZ69_TOBAC; NAC domain-containing protein 21/22-like
TrEMBL	A0A1U7YCR1	9e-87	A0A1U7YCR1_NICSY; NAC domain-containing protein 21/22-like
STRING	XP_009800923.1	1e-87	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1882	24	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28530.1	9e-62	NAC domain containing protein 74