PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc002514.1_g00007.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB
Protein Properties Length: 578aa    MW: 63099.2 Da    PI: 4.8876
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc002514.1_g00007.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.56.4e-183784148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             +g+WT  Ed +lvd+v+++G g+W+++ ++ g+ R++k+c++rw ++l
  Itr_sc002514.1_g00007.1 37 KGPWTSAEDAILVDYVTKHGEGNWNAVQKHSGLARCGKSCRLRWANHL 84
                             79******************************************9986 PP
2Myb_DNA-binding31.83.2e-1090152146
                              TSSS-HHHHHHHHHHHHHTTTT.................-HHHHHHHHTTTS-HHHHHHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg.................tWktIartmgkgRtlkqcksrwqk 46 
                              +g++T+eE+ ++++++ ++G++                 + + I + m  gRt++++k++w++
  Itr_sc002514.1_g00007.1  90 KGAFTPEEECRIIELHSKMGNKwarmaaetkweelcligNGNVICQLMLPGRTDNEIKNYWNT 152
                              799*******************888888888888888887778888777************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.7533288IPR017930Myb domain
SuperFamilySSF466892.42E-2436150IPR009057Homeodomain-like
SMARTSM007173.3E-133686IPR001005SANT/Myb domain
PfamPF002497.2E-153784IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-233891IPR009057Homeodomain-like
CDDcd001679.01E-113984No hitNo description
SMARTSM007172.4E-989156IPR001005SANT/Myb domain
PROSITE profilePS5129412.51689158IPR017930Myb domain
PfamPF002495.7E-990152IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.1E-2292157IPR009057Homeodomain-like
CDDcd001672.31E-792152No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009751Biological Processresponse to salicylic acid
GO:0043068Biological Processpositive regulation of programmed cell death
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0045926Biological Processnegative regulation of growth
GO:0048235Biological Processpollen sperm cell differentiation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 578 aa     Download sequence    Send to blast
MTSESEDGMT LKGSVSSPSI EEVTAGGKTG GSVLLKKGPW TSAEDAILVD YVTKHGEGNW  60
NAVQKHSGLA RCGKSCRLRW ANHLRPDLKK GAFTPEEECR IIELHSKMGN KWARMAAETK  120
WEELCLIGNG NVICQLMLPG RTDNEIKNYW NTRIKRRQRA GLPIYPPDLC LRSINARQQN  180
EDMNIFSIGD MQHPDLFQIN SFEIPAVEFK NLELNQHSYP PPSLVDIPAS SLLDIPSSSL  240
VGQGLKSSCG NRYFHSTVHP SKRLRGTETL FPGLSDNGSD FLPACSRFQS GAYIAAQSFG  300
VSSAYNQNLA SDDPSLLSVI PGSHASLNGN PSYSSEPSWE KKPELPSLQS QMGSWYSPSS  360
PLPSLESIDT LIQSPPPTEH TESGSLSPRN SGLLDAVLYE SQTLKHSKNN NTSSQQTTSD  420
ASIIPGSIVD NSCPDLHDTE WEAYGDPISP LGHSSASVFS EYTPAVNGSC SLDEPQTVVA  480
GCKVKQEEEG MELSPMQCDT GRDDDEESFQ NMFSMPDFLL ASNCFGSQTE YSKNHCVLKE  540
VFGAVLFDDF SSRDCKNMRT ATSSGGSPCP WDHAMSTV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-27351575107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00348DAPTransfer from AT3G11440Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019163949.10.0PREDICTED: transcription factor GAMYB-like
RefseqXP_019163950.10.0PREDICTED: transcription factor GAMYB-like
RefseqXP_019163951.10.0PREDICTED: transcription factor GAMYB-like
TrEMBLA0A068UQ740.0A0A068UQ74_COFCA; Uncharacterized protein
STRINGXP_009786742.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20212358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11440.14e-81myb domain protein 65