PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc002485.1_g00010.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C2H2

Protein Properties

Length: 669aa MW: 76225.2 Da PI: 8.7549

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc002485.1_g00010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	10.8	0.0016	183	205	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C +C F+ + + rH r H Itr_sc002485.1_g00010.1 183 YYCDICRIGFNERTKFARHRRFH 205 89*******************99 PP
2	zf-C2H2	10.7	0.0017	360	382	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C +C F+ + ++ +H r H Itr_sc002485.1_g00010.1 360 YYCDICRIGFTEPPEFAQHRRFH 382 89*******************99 PP
3	zf-C2H2	15.9	3.7e-05	573	595	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+k+F r +++ H r H Itr_sc002485.1_g00010.1 573 YRCQFCPKVFDRLTSFTGHVRIH 595 9********************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	3.69E-7	182	252	No hit	No description
SMART	SM00355	0.43	183	205	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.616	183	210	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	185	205	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.37	230	252	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	8.642	230	257	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	232	252	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.35	360	382	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.91	360	387	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	362	382	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.37	407	429	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	8.642	407	434	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	4.92E-8	407	429	No hit	No description
PROSITE pattern	PS00028	0	409	429	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	4.92E-8	568	595	No hit	No description
SMART	SM00355	0.0019	573	595	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.388	573	600	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	575	595	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 669 aa Download sequence Send to blast
MISYLDNYYL QQNQQRAELE LKMVAEDGVP IDFMALERGG DDAFTEELNR RTAGMESRDQ 60 LFRFIEGLGG EWLNRKRMCV DAGEFIDVLP AGWKVTVAIK PSRQGRSVPY FYNTSPNPSI 120 QFYSQKSIRQ NVAVLPREDG GDGNDGVNST AIVTYIAPEM HGEEILLEGT DNPAGGVQIH 180 DRYYCDICRI GFNERTKFAR HRRFHKKTRS GGYRNRPPLT DGMIMKDGKY GCQFCPKVFD 240 RLTSYTGHVG IHLRRNLKWS STSIEAAPRA AHTYYGKDPR GARVRLRPRA YSRVGNLRLL 300 SEILMRDEEE DLANLRLLSE VSERCIWAIV TYIAPEMHGE EILQEGTDNL AGGVQIHGRY 360 YCDICRIGFT EPPEFAQHRR FHRKTRSGGY RNRPPLTDGM IMKDGKYGCQ FCPKVFDRLT 420 SYTGHVGIHL RRNLKSIEAA PKAANTYYRK HILGFKLENE NEAAIFNFDP SDEQFPSCKE 480 VARFLQPQFL SRPTAQNVAV LPRGDDGDGD GDGNDGVNST AIVTYIAPEM HGEEILPEGI 540 DNPAGGVSQE NSFRRYRNRP PLTDGMIMKD GKYRCQFCPK VFDRLTSFTG HVRIHLRRNL 600 KCSSTSIEAA PRAAHTYYGK DPRGARVRLR PRAYSRVDNL RLLSEISIRD KEEEFANLRF 660 LSEVSERLI

Sequence ? help Back to Top

Protein Sequence Length: 669 aa Download sequence Send to blast

MISYLDNYYL QQNQQRAELE LKMVAEDGVP IDFMALERGG DDAFTEELNR RTAGMESRDQ  60
LFRFIEGLGG EWLNRKRMCV DAGEFIDVLP AGWKVTVAIK PSRQGRSVPY FYNTSPNPSI  120
QFYSQKSIRQ NVAVLPREDG GDGNDGVNST AIVTYIAPEM HGEEILLEGT DNPAGGVQIH  180
DRYYCDICRI GFNERTKFAR HRRFHKKTRS GGYRNRPPLT DGMIMKDGKY GCQFCPKVFD  240
RLTSYTGHVG IHLRRNLKWS STSIEAAPRA AHTYYGKDPR GARVRLRPRA YSRVGNLRLL  300
SEILMRDEEE DLANLRLLSE VSERCIWAIV TYIAPEMHGE EILQEGTDNL AGGVQIHGRY  360
YCDICRIGFT EPPEFAQHRR FHRKTRSGGY RNRPPLTDGM IMKDGKYGCQ FCPKVFDRLT  420
SYTGHVGIHL RRNLKSIEAA PKAANTYYRK HILGFKLENE NEAAIFNFDP SDEQFPSCKE  480
VARFLQPQFL SRPTAQNVAV LPRGDDGDGD GDGNDGVNST AIVTYIAPEM HGEEILPEGI  540
DNPAGGVSQE NSFRRYRNRP PLTDGMIMKD GKYRCQFCPK VFDRLTSFTG HVRIHLRRNL  600
KCSSTSIEAA PRAAHTYYGK DPRGARVRLR PRAYSRVDNL RLLSEISIRD KEEEFANLRF  660
LSEVSERLI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	199	208	RHRRFHKKTR

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7850	16	19