PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc002481.1_g00008.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | C2H2 | ||||||||
Protein Properties | Length: 127aa MW: 14002.2 Da PI: 8.5368 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.2 | 1.4e-05 | 21 | 43 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ Cg+ F+r+ L H+r+H Itr_sc002481.1_g00008.1 21 HICTVCGRWFNRRQALLGHMRLH 43 68*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.76E-6 | 18 | 45 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 9.0E-5 | 19 | 43 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 5.2E-4 | 21 | 43 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.679 | 21 | 43 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.2E-5 | 21 | 43 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 23 | 43 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 127 aa Download sequence Send to blast |
MLINGSSSFN FLPLAQPQQN HICTVCGRWF NRRQALLGHM RLHGSHGWRI LCPHFFNRDH 60 LANVLPRPGI PAVGRQVAAA PPPPIAAPPP PADNALLAQP EVPVELPDLN EPRDYRVPDL 120 NFPPPPA |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A328DQD6 | 4e-18 | A0A328DQD6_9ASTE; Uncharacterized protein | ||||
TrEMBL | A0A484NEG6 | 4e-18 | A0A484NEG6_9ASTE; Uncharacterized protein |