PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc002478.1_g00003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | MYB | ||||||||
Protein Properties | Length: 282aa MW: 31948.1 Da PI: 7.2907 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.4 | 7e-18 | 26 | 73 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEd ll+++++ +G g+W++ a+ g++Rt+k+c++rw++yl Itr_sc002478.1_g00003.1 26 RGPWTPEEDTLLIHYIACHGEGRWNLLAKSSGLRRTGKSCRLRWLNYL 73 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 48.9 | 1.5e-15 | 79 | 122 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ +++E++l+++++ ++G++ W++Ia+ ++ gRt++++k++w++ Itr_sc002478.1_g00003.1 79 RGNLSPQEQLLILELHSKWGNR-WSKIAQFLP-GRTDNEIKNYWRT 122 7899******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.869 | 21 | 73 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.64E-31 | 24 | 120 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-14 | 25 | 75 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.6E-16 | 26 | 73 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.6E-23 | 27 | 80 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.10E-12 | 28 | 73 | No hit | No description |
PROSITE profile | PS51294 | 24.275 | 74 | 128 | IPR017930 | Myb domain |
SMART | SM00717 | 2.8E-14 | 78 | 126 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-14 | 79 | 122 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.4E-23 | 81 | 127 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.01E-11 | 83 | 122 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 282 aa Download sequence Send to blast |
MASSPSKSST SSCLTVEDMD GTELRRGPWT PEEDTLLIHY IACHGEGRWN LLAKSSGLRR 60 TGKSCRLRWL NYLKPDVKRG NLSPQEQLLI LELHSKWGNR WSKIAQFLPG RTDNEIKNYW 120 RTRVQKQARH LKIDSNSAAF QQLIRGFWMP RLIQKIQASS IQHSDEILNT QSISQQVPAP 180 APAPHDCHQT TIINSGLENT PNLKLSECPK TALSNDPKFE PCPNGHHQYY ATHLMDGFSP 240 SPFPETGEFK DVIDYDLLGT GGGNSLIMDE FLDDSLWSMD KF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 6e-26 | 23 | 128 | 4 | 108 | B-MYB |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019189643.1 | 1e-173 | PREDICTED: transcription factor MYB21-like | ||||
TrEMBL | M1A448 | 4e-89 | M1A448_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400014383 | 7e-90 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25340.1 | 2e-79 | myb domain protein 116 |