PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc002423.1_g00008.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 266aa    MW: 28797 Da    PI: 7.5812
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc002423.1_g00008.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.49.7e-2087136255
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                               y+G+r+++ +g+W+AeIrdp     +  r++lg+f taeeAa+a++ a+ +++g
  Itr_sc002423.1_g00008.1  87 VYRGIRQRP-WGKWAAEIRDPQ----KgVRVWLGTFNTAEEAARAYDVAATRIRG 136
                              69*******.**********94....35************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.4E-3387144IPR001471AP2/ERF domain
PfamPF008471.5E-1387136IPR001471AP2/ERF domain
SuperFamilySSF541715.1E-2387144IPR016177DNA-binding domain
PROSITE profilePS5103224.89587144IPR001471AP2/ERF domain
SMARTSM003803.2E-3987150IPR001471AP2/ERF domain
PRINTSPR003676.3E-128899IPR001471AP2/ERF domain
CDDcd000181.21E-3388144No hitNo description
PRINTSPR003676.3E-12110126IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008219Biological Processcell death
GO:0009723Biological Processresponse to ethylene
GO:0009735Biological Processresponse to cytokinin
GO:0009753Biological Processresponse to jasmonic acid
GO:0010286Biological Processheat acclimation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051707Biological Processresponse to other organism
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MCGGAIISDY DPISERRRRK ISTHDLWAEL DPISELWSFN SSSAINGLKQ SSPSTLPDAT  60
NRLNQVCKNG GAENAEKSEK KRARKNVYRG IRQRPWGKWA AEIRDPQKGV RVWLGTFNTA  120
EEAARAYDVA ATRIRGKKAK LNFPSPPPSP ATKPSCGRDH SPQESSDSSS ATAASLNPSP  180
LMNAGVVLSH APPYYPVGAA DGHHNHGGSE LKAQISDLES FLGLEPEPTQ LGGAGAEFDS  240
FDPFLVGPVE ECFGATQQHQ VFYTVP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-2288144663ATERF1
3gcc_A2e-2288144663ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00109PBMTransfer from AT3G16770Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019178105.11e-160PREDICTED: ethylene-responsive transcription factor RAP2-3-like isoform X2
TrEMBLA0A1S3Y4K77e-69A0A1S3Y4K7_TOBAC; ethylene-responsive transcription factor RAP2-3-like
STRINGXP_009597158.11e-69(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.14e-41ethylene-responsive element binding protein