PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc002379.1_g00008.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bHLH
Protein Properties Length: 261aa    MW: 29572.2 Da    PI: 5.179
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc002379.1_g00008.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.13.7e-09931341155
                              HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              +RR++iN  ++ L +llP++   + +K + a+iL  A++Y+k+L+
  Itr_sc002379.1_g00008.1  93 NRRQQINANLSYLHSLLPES---YIQKGDEASILGGAINYVKELE 134
                              7*******************...9******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.05582133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.2E-1193146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.04E-893138No hitNo description
PfamPF000105.0E-693134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-993145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.12707.8E-4146194No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MELEAMALYK VPQVSWTSST CDFLANNNQF PLQFQCPNFP EFEACSYYPP TTHQQWLPNS  60
SPADHVVVAE KEEEDDEVSG PRRQHRRSNG QTNRRQQINA NLSYLHSLLP ESYIQKGDEA  120
SILGGAINYV KELEEELQVL CAKNSTTNLL EDVGSGASDD CRGYQLSTPS GDHIQVTMAG  180
ENHVDLKLHS KWRPKLLPRF ISQIESLMLT VLHFNLSRAD QFVLCSLSLK VEDGSKYTSV  240
KRIATVVNRI MARIQEEDER V
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019190344.11e-148PREDICTED: transcription factor bHLH96-like
TrEMBLA0A1S4A5742e-45A0A1S4A574_TOBAC; transcription factor bHLH94-like
TrEMBLA0A1U7YJI72e-45A0A1U7YJI7_NICSY; transcription factor bHLH94-like
STRINGXP_009617734.18e-47(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA132271518
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.12e-36bHLH family protein