PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc002357.1_g00003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | FAR1 | ||||||||
Protein Properties | Length: 256aa MW: 28724.5 Da PI: 8.1946 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 28.4 | 5.3e-09 | 36 | 86 | 1 | 52 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkkteker 52 +fY++Y +vGF +r + ks ++g i++++ vC++eg++++ +++++++ Itr_sc002357.1_g00003.1 36 EFYKNYVVKVGFVTRSNFVVKS-QDGMIVTKHIVCNREGFKNSGAQHSNSKS 86 6****************99999.8888**************99988844433 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 6.8E-7 | 36 | 85 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 3.7E-9 | 144 | 187 | IPR018289 | MULE transposase domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MLFICYSSND LQSGNNLNEI KPLLGMSFTT LEAATEFYKN YVVKVGFVTR SNFVVKSQDG 60 MIVTKHIVCN REGFKNSGAQ HSNSKSNVDA GEGIPFQRGK EFQTELVAKL GLYSSTREVL 120 VMSCAGYFGQ IQSQKKNYVA FRDVVSFDGT YSTNRYSMVF TPFTGVDNHK KCVTFGVGLL 180 LKEDIKDVFM GGLLRTTSRS ESENYAFSRF TIPQSSLVEF LINFDSALDS QRHINAKHNS 240 DNEWSRYVSP VSLVEC |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3136 | 2 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07500.1 | 6e-11 | FAR1 family protein |