PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc002312.1_g00005.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | ERF | ||||||||
Protein Properties | Length: 271aa MW: 30664.7 Da PI: 5.4457 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.8 | 5.5e-18 | 34 | 83 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++ GVr+++ +grWvAeI+d ++ + r +lg++ +aeeAa+a+++a+ l+g Itr_sc002312.1_g00005.1 34 KFVGVRQRP-SGRWVAEIKDTTQ---NIRMWLGTYESAEEAARAYDQAAFLLRG 83 799******.7*********433...5**********************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 6.7E-13 | 34 | 83 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.41E-27 | 34 | 94 | No hit | No description |
SMART | SM00380 | 3.3E-33 | 34 | 100 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.28E-17 | 34 | 93 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 7.0E-25 | 34 | 94 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.192 | 34 | 94 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.6E-7 | 35 | 46 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.6E-7 | 57 | 73 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 271 aa Download sequence Send to blast |
MEIHFQQQHE DEIFSSLQKE SGWNKQRPRK NKNKFVGVRQ RPSGRWVAEI KDTTQNIRMW 60 LGTYESAEEA ARAYDQAAFL LRGSRSTRTR TNFETIAPPD SNSPLASRIR NLLNTKKKSS 120 AKLQRIGDFS SSSSSSITAS GQSGGSAENQ DTKSSSDEAL DFGYDDEIRE SDDRVFDNTY 180 KPDATSSTSL LQSWSFEQGL EFAQQMIDIP KTEGEGEVVG FSEFERMKVE RSISASLYAV 240 HGVQEYMHMQ AINHSSQTQT QTLWDLPPFF S |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 5e-14 | 35 | 86 | 3 | 55 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019173236.1 | 1e-132 | PREDICTED: ethylene-responsive transcription factor RAP2-11-like | ||||
TrEMBL | A0A1S4C1N6 | 6e-72 | A0A1S4C1N6_TOBAC; ethylene-responsive transcription factor RAP2-11-like | ||||
STRING | XP_009599489.1 | 4e-71 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2018 | 22 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 7e-22 | related to AP2 11 |