PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc002310.1_g00002.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family LBD
Protein Properties Length: 243aa    MW: 26484.9 Da    PI: 9.1708
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc002310.1_g00002.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260121.83.8e-38491491101
                   DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 
                              aCa+Ck++rrkC++dC+lap+fpa ++++f nvhklFG++n+++ l+a+++ + +d m s++yeA+ara dPv G++g+i++l++q
  Itr_sc002310.1_g00002.1  49 ACAVCKHQRRKCPPDCPLAPHFPAYKQRDFLNVHKLFGVRNLTRALAAIDQRKTHDFMVSVIYEANARAVDPVGGCLGLIQNLNHQ 134
                              7************************************************************************************* PP

                   DUF260  87 leqlkaelallkeel 101
                              l+ + +el++++++l
  Itr_sc002310.1_g00002.1 135 LKYSTVELDMVNQQL 149
                              **********99985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.38648149IPR004883Lateral organ boundaries, LOB
PfamPF031955.9E-3649146IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MVNTANNPTN TIPKASTPSP PPPPYSLSFK HTAETHTASA SAAAGGGGAC AVCKHQRRKC  60
PPDCPLAPHF PAYKQRDFLN VHKLFGVRNL TRALAAIDQR KTHDFMVSVI YEANARAVDP  120
VGGCLGLIQN LNHQLKYSTV ELDMVNQQLA FYRSRQMADP PIQLGSSSNT PDFIRNEKQH  180
IIGGDHRFPY ASSDKQPLYN GEVSFAGSVK LSDGIALIDN SIKAKEEGEE DLKNAASKFS  240
LRK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-24391641126LOB family transfactor Ramosa2.1
5ly0_B2e-24391641126LOB family transfactor Ramosa2.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019190565.11e-132PREDICTED: LOB domain-containing protein 22-like
TrEMBLA0A328CXT81e-45A0A328CXT8_9ASTE; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13850.12e-34LOB domain-containing protein 22