PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc002282.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB
Protein Properties Length: 309aa    MW: 34297.1 Da    PI: 9.1218
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc002282.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.21.9e-082771345
                             SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
          Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                             +WT+ E + + +a +++ ++   +W+++a++++ g+t  +++  + 
  Itr_sc002282.1_g00001.1 27 KWTPAENKAFENALALYDKDtpdRWEKVAEMVP-GKTVGDVIRQYK 71
                             8********************************.****99998876 PP
2Myb_DNA-binding44.43.8e-14144188347
                              SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                              +WT+eE+ l++ + k++G+g+W+ I+r +  +Rt+ q+ s+ qky
  Itr_sc002282.1_g00001.1 144 PWTEEEHRLFLMGLKKYGKGDWRNISRNFVITRTPTQVASHAQKY 188
                              8*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.5E-42271IPR009057Homeodomain-like
PROSITE profilePS512939.6172376IPR017884SANT domain
SMARTSM007171.3E-102476IPR001005SANT/Myb domain
SuperFamilySSF466898.97E-122681IPR009057Homeodomain-like
PfamPF002492.4E-72772IPR001005SANT/Myb domain
CDDcd001672.43E-82773No hitNo description
PROSITE profilePS5129421.269137193IPR017930Myb domain
SuperFamilySSF466895.81E-17138192IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-17140192IPR006447Myb domain, plants
SMARTSM007172.9E-13141191IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-12141188IPR009057Homeodomain-like
PfamPF002491.6E-12144188IPR001005SANT/Myb domain
CDDcd001671.80E-11144189No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MEILSPSSSS YLSNSSWIVE ESNKSTKWTP AENKAFENAL ALYDKDTPDR WEKVAEMVPG  60
KTVGDVIRQY KELEDDVSSI EAGLMDLPVP VYASSSSSLS PSPFTLDWGN SRGFDAPRQP  120
FAGAGGKRPS ANRTPEQERK KGVPWTEEEH RLFLMGLKKY GKGDWRNISR NFVITRTPTQ  180
VASHAQKYFI RQLSGGKDKR RASIHDITTV NLNDNNQTPS PDNNKPPSPE GGATATGHSH  240
HKMPFQWSSH QVSNGAVMGS FSTAQPNFFA PSPYGFGSYG MNKVQNHEIY FGQQNMALQI  300
QSAQQFHPA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A9e-1528991180RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019161534.11e-176PREDICTED: transcription factor DIVARICATA-like
SwissprotQ8S9H71e-130DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A1U8H2M51e-139A0A1U8H2M5_CAPAN; transcription factor DIVARICATA-like
TrEMBLA0A2G3CBQ61e-139A0A2G3CBQ6_CAPCH; Transcription factor DIVARICATA
STRINGPGSC0003DMT4000780291e-138(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45824140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.17e-97MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]