PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc002277.1_g00004.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 384aa    MW: 42164.3 Da    PI: 4.5535
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc002277.1_g00004.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.11.1e-18119168255
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                              +y+G+r+++ +g+W+AeIrdp+    +  r++lg+f taeeAa+a++  +++++g
  Itr_sc002277.1_g00004.1 119 QYRGIRQRP-WGKWAAEIRDPV----KgVRVWLGTFNTAEEAARAYDVEARRIRG 168
                              69*******.**********75....44************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.33E-32119177No hitNo description
SMARTSM003804.8E-37119182IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.7E-32119178IPR001471AP2/ERF domain
SuperFamilySSF541712.81E-22119178IPR016177DNA-binding domain
PROSITE profilePS5103224.026119176IPR001471AP2/ERF domain
PRINTSPR003671.2E-11120131IPR001471AP2/ERF domain
PfamPF008474.2E-11120168IPR001471AP2/ERF domain
PRINTSPR003671.2E-11142158IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0070483Biological Processdetection of hypoxia
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MCGGAIISDI IPPSRSSRRL TADLLWGPAD LSSNNGGKKK NRNSNSSGSF YSRPSRSGIA  60
DIDNDFEADF QHFKDYSDEE VEVKPFDFSA SKQPGFSSGS NSDLTKDADK SSKRKRKNQY  120
RGIRQRPWGK WAAEIRDPVK GVRVWLGTFN TAEEAARAYD VEARRIRGKK AKVNFPDEAP  180
ISGPGCNVKA NARIQKESPQ PDMSFTNILD SVYYEPVNSL DEKPLTKQNE IIDAYAAPGD  240
MSHTSYAPSD TANLFFNSEE GSNSFGCSEL GWGDLSSRTP EISSVLSAAV EADEALFAEE  300
ANQAKKLKSS SENLVASDGN TLNKLSDELS AFEAEMKFFQ IPYLEGNWEA SVDTFLNGDA  360
TQDGGSAMDL WSFDYAPTLM GNEF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-21119176260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00204DAPTransfer from AT1G53910Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019194413.10.0PREDICTED: ethylene-responsive transcription factor RAP2-12
TrEMBLE3VVR11e-162E3VVR1_PETHY; Ethylene-responsive-element-binding factor 2
STRINGXP_009775920.11e-160(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14462466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.35e-49related to AP2 12