PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc002266.1_g00009.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

GeBP

Protein Properties

Length: 384aa MW: 43215.9 Da PI: 4.9725

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc002266.1_g00009.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	103	2.4e-32	162	253	2	98
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqk 87 lfqrlwse+Dei lL G+i++++k++++p+ d+daf+ef+++s++f++sk+ql +K++r+++ + ++ k +sfsk+h+qk Itr_sc002266.1_g00009.1 162 LFQRLWSEDDEIGLLEGMIEYTEKENADPHTDLDAFHEFIRNSLHFTMSKNQLQNKMKRMRRNYINNAGK-----GKSFSKPHEQK 242 79**************************************************************9999.....678**** PP DUF573 88 ifelskkiWgs 98 +++ls+kiWg+ Itr_sc002266.1_g00009.1 243 TYQLSSKIWGK 253 *******95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	7.4E-29	163	252	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 384 aa Download sequence Send to blast
MAKTRSELKK SVAEEEEEEE EEEEDSSTDN EGSESDSESE SEQEQTQTQM QIAKSPSAAA 60 TKVTEASSTP AKVQAASSSS YETDSESDSE SESERPAPIV KPTDQPRESA QTKPRKSGAE 120 AKRPAPAADR EVTESKRQKR NPESAVEISE IKPSEEDSKK QLFQRLWSED DEIGLLEGMI 180 EYTEKENADP HTDLDAFHEF IRNSLHFTMS KNQLQNKMKR MRRNYINNAG KGKSFSKPHE 240 QKTYQLSSKI WGKGDEKIED SNQVRIVHAL IACNGSLKEE KINKNSMKKA PVVQDAIETP 300 KANSAAASSG WMNGVKRMEG ENIGRFNLQW PFMEKNKGIV ISEEKRKEIE KKRKAVVVAE 360 LDLFLKELDL IQEQAKATLD AMKK

Sequence ? help Back to Top

Protein Sequence Length: 384 aa Download sequence Send to blast

MAKTRSELKK SVAEEEEEEE EEEEDSSTDN EGSESDSESE SEQEQTQTQM QIAKSPSAAA  60
TKVTEASSTP AKVQAASSSS YETDSESDSE SESERPAPIV KPTDQPRESA QTKPRKSGAE  120
AKRPAPAADR EVTESKRQKR NPESAVEISE IKPSEEDSKK QLFQRLWSED DEIGLLEGMI  180
EYTEKENADP HTDLDAFHEF IRNSLHFTMS KNQLQNKMKR MRRNYINNAG KGKSFSKPHE  240
QKTYQLSSKI WGKGDEKIED SNQVRIVHAL IACNGSLKEE KINKNSMKKA PVVQDAIETP  300
KANSAAASSG WMNGVKRMEG ENIGRFNLQW PFMEKNKGIV ISEEKRKEIE KKRKAVVVAE  360
LDLFLKELDL IQEQAKATLD AMKK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019174275.1	1e-172	PREDICTED: probable transcription factor At1g61730

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3042	19	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61730.1	3e-25	DNA-binding storekeeper protein-related transcriptional regulator