PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc002250.1_g00004.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 223aa    MW: 24053.8 Da    PI: 6.5102
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc002250.1_g00004.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.56e-1761108355
                      AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                              y+G+rw+  +g+Wv+eIr+p++   + r++lg++ t+e+Aa+a++ a+++l+g
  Itr_sc002250.1_g00004.1  61 YRGIRWR--NGKWVSEIREPKK---TSRIWLGTYLTPEMAAAAYDVAALALKG 108
                              9*****7..5*********854...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103219.69150116IPR001471AP2/ERF domain
SMARTSM003804.7E-2760122IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-1860118IPR016177DNA-binding domain
CDDcd000181.26E-1561118No hitNo description
PfamPF008471.2E-961108IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.4E-2661118IPR001471AP2/ERF domain
PRINTSPR003672.2E-66172IPR001471AP2/ERF domain
PRINTSPR003672.2E-698118IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MANPFNYYNN NVNVPPNPTP SLQIPDPSHH LHHNTTATVT AFQDHPSPSG GRGSPRRHHL  60
YRGIRWRNGK WVSEIREPKK TSRIWLGTYL TPEMAAAAYD VAALALKGPD APLNFPDSVV  120
SYPIPRSHSA VDIAAAAARA AASRAPAPSG HGGSSSELAG ASSTTVVPPQ QAEEEEFVDE  180
EALFDMPNLM VDMAGGMMVS PPRMKPSPPH GDDSPDYSLW SYP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-1349116372Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019191810.12e-77PREDICTED: ethylene-responsive transcription factor ERF027
SwissprotQ9FJ904e-47ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLA0A1U8NDA23e-56A0A1U8NDA2_GOSHI; ethylene-responsive transcription factor ERF027-like
STRINGVIT_16s0100g00400.t012e-56(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA55322110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.15e-33ERF family protein
Publications ? help Back to Top
  1. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]