PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc002246.1_g00001.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 627aa MW: 72125.7 Da PI: 6.5086

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc002246.1_g00001.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	58.9	1.6e-18	92	189	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.........tekerrtraetrtgCkaklkvkkekdgkwe 77 +fY++YA +GF+vr s+ +k+ r+g ++ + + Cs+eg++ ++++ ++k+ r+r+++ +gC+a+ ++++++dg ++ Itr_sc002246.1_g00001.1 92 QFYKHYAAVAGFDVRCSTLRKT-RDGDVKVKCLLCSREGQNLQSNEVnqtpiedtsEKKQTRRRVSNWVGCNARCELRRQEDGDYV 176 6****************999.7888*********99887778999988888889999***************** PP FAR1 78 vtkleleHnHela 90 +t l++ HnH l+ Itr_sc002246.1_g00001.1 177 MTVLQEAHNHRLC 189 **********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.8E-15	92	189	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	4.8E-12	311	359	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 627 aa Download sequence Send to blast
LELRRKKYDS YISKENTPYP THSLEVFQGL RKEEGISTQE PHPAMEQDGE RDFGGTTDMA 60 KQYGNNECIP ECDESIRPYL GQRFPTIDEG VQFYKHYAAV AGFDVRCSTL RKTRDGDVKV 120 KCLLCSREGQ NLQSNEVNQT PIEDTSEKKQ TRRRVSNWVG CNARCELRRQ EDGDYVMTVL 180 QEAHNHRLCS ELGRPFLKIN RELGIGHQAF IAICAKVNIG TSKAFEMYKE MVGGFKNIGA 240 TMVDLRNCRR DVHAHLHEAD AQALINKYVQ KKSLFPMYTF EYDVDEENHI RRVFWADPTA 300 KKNYTHFGDM VAFDATYRTN RYKLVFLPFT GVDNHKKCAT FGACLISKED IASYTWLLVG 360 ERAGVNLAKN ETFRKKLNAM VWDETLGHEE FELSWHAVMT GYGLEDHPWF SQLFEIRSNW 420 IEAYFCEVFM GGLMRTTSRS KAENGLFGAC INEDGSLLEF FTQFESVIEM QRHKQARLIA 480 ECEASLPSTK TPLKVEKHAS SIYTITIFYD VKTEIYEGCL SCKITSKDEA QDTISHVFVV 540 LKDNDAEMIP PQYVLPRWTR TAWPHNKNEK PTGQDAESKN ETEDNAITAK LWNELYTCMA 600 MSKGNTPEQQ QMLNFMLLRA WHMGANL

Sequence ? help Back to Top

Protein Sequence Length: 627 aa Download sequence Send to blast

LELRRKKYDS YISKENTPYP THSLEVFQGL RKEEGISTQE PHPAMEQDGE RDFGGTTDMA  60
KQYGNNECIP ECDESIRPYL GQRFPTIDEG VQFYKHYAAV AGFDVRCSTL RKTRDGDVKV  120
KCLLCSREGQ NLQSNEVNQT PIEDTSEKKQ TRRRVSNWVG CNARCELRRQ EDGDYVMTVL  180
QEAHNHRLCS ELGRPFLKIN RELGIGHQAF IAICAKVNIG TSKAFEMYKE MVGGFKNIGA  240
TMVDLRNCRR DVHAHLHEAD AQALINKYVQ KKSLFPMYTF EYDVDEENHI RRVFWADPTA  300
KKNYTHFGDM VAFDATYRTN RYKLVFLPFT GVDNHKKCAT FGACLISKED IASYTWLLVG  360
ERAGVNLAKN ETFRKKLNAM VWDETLGHEE FELSWHAVMT GYGLEDHPWF SQLFEIRSNW  420
IEAYFCEVFM GGLMRTTSRS KAENGLFGAC INEDGSLLEF FTQFESVIEM QRHKQARLIA  480
ECEASLPSTK TPLKVEKHAS SIYTITIFYD VKTEIYEGCL SCKITSKDEA QDTISHVFVV  540
LKDNDAEMIP PQYVLPRWTR TAWPHNKNEK PTGQDAESKN ETEDNAITAK LWNELYTCMA  600
MSKGNTPEQQ QMLNFMLLRA WHMGANL

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3136	2	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-57	FAR1-related sequence 5