PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc002231.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family NAC
Protein Properties Length: 491aa    MW: 55234.8 Da    PI: 4.5963
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc002231.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM84.91.5e-261610045128
                      NAM  45 wdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfy.kgrapk..gektdWvmheyr 127
                              ++L  k+k+++++w+fFs+rd++y++g r+nratk+g+Wk tg+d+ +++ ++++vg+kktLvfy kgr+p+  +++tdWvm ey+
  Itr_sc002231.1_g00001.1  16 QELS-KLKTGDRQWFFFSPRDRRYPNGARSNRATKQGFWKVTGRDRIITC-NSRNVGVKKTLVFYnKGRTPNikPTRTDWVMYEYT 99 
                              5665.778999***************************************.999***********76677752267*********8 PP

                      NAM 128 l 128
                              +
  Itr_sc002231.1_g00001.1 100 M 100
                              7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100533.5141123IPR003441NAC domain
SuperFamilySSF1019417.32E-3220123IPR003441NAC domain
PfamPF023652.2E-132599IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MVYSPQNCVR HRATSQELSK LKTGDRQWFF FSPRDRRYPN GARSNRATKQ GFWKVTGRDR  60
IITCNSRNVG VKKTLVFYNK GRTPNIKPTR TDWVMYEYTM DEEELKRCPS AQDYYALYRI  120
FRKSGIGPKN GEQYGAPFRE EDWADDDCLT VNPLVEQEKY TNQVNDVNVE SPIPNDFEIP  180
NIEELLDLLE DEPCTVEPLV CGEDTESTLL DHSSQNPNLP AQNAILHPTI PHNVQANFDV  240
TQCSTWQPQL PEAPEFTSAP VYHGLNPQMV EEDYMEDFLE VDDLAGPEPS INNFIKPGET  300
MGIQQYGYDM GTGEARHPNQ PYVNNAENGM VNPVSTYFSN NHETMNSQQL YLNEDNEGSN  360
RLWSPDQRCN VATPAEANHE VFHPATLGVV YDSHSLDDHP KGANSNQITR EDGATNSRFS  420
SALWGSLESI PATPASAAES PPADLAFEQT SRRSRVIARN MNNASRVIAR NMNNASGTSS  480
LTYGGCSLLN L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-252412369165NO APICAL MERISTEM PROTEIN
1ut4_B5e-252412369165NO APICAL MERISTEM PROTEIN
1ut7_A5e-252412369165NO APICAL MERISTEM PROTEIN
1ut7_B5e-252412369165NO APICAL MERISTEM PROTEIN
4dul_A5e-252412369165NAC domain-containing protein 19
4dul_B5e-252412369165NAC domain-containing protein 19
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019175354.10.0PREDICTED: NAC domain-containing protein 17-like isoform X1
TrEMBLA0A1S3XW601e-147A0A1S3XW60_TOBAC; NAC domain-containing protein 17-like
TrEMBLA0A1U7W9881e-147A0A1U7W988_NICSY; uncharacterized protein LOC104225129 isoform X1
STRINGXP_009775198.11e-148(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32122451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34180.14e-65NAC domain containing protein 16