PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc002227.1_g00005.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | MYB | ||||||||
Protein Properties | Length: 1064aa MW: 119808 Da PI: 8.605 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43.7 | 6.3e-14 | 453 | 497 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 WT+eEd +l av+ +G +W +a+ + gRt+ qc +rw k Itr_sc002227.1_g00005.1 453 REWTEEEDNKLRAAVEVFGESNWQVVAASLE-GRTGTQCSNRWIKT 497 68*****************************.***********987 PP | |||||||
2 | Myb_DNA-binding | 54.1 | 3.7e-17 | 506 | 549 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g+WT++Ed++l+ av ++G++tW++Ia++++ gRt qc++rw + Itr_sc002227.1_g00005.1 506 GKWTADEDKRLKVAVMLFGPKTWRKIAQYVP-GRTHVQCRERWAN 549 79*****************************.***********77 PP | |||||||
3 | Myb_DNA-binding | 41.4 | 3.4e-13 | 560 | 599 | 4 | 45 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 WT+eEd +l a++++G W+++a+++ Rt++qc+ rw Itr_sc002227.1_g00005.1 560 WTEEEDFKLESAIQEHGYS-WSKVAACVA-PRTDNQCRRRWK 599 *****************99.*********.9**********7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.272 | 305 | 403 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 3.2E-7 | 308 | 331 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.5E-4 | 309 | 405 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.2E-7 | 378 | 413 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.06E-6 | 385 | 430 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 11 | 408 | 448 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.81E-20 | 431 | 503 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.0E-17 | 444 | 503 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.473 | 447 | 498 | IPR017930 | Myb domain |
SMART | SM00717 | 2.2E-14 | 451 | 500 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.7E-12 | 453 | 496 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.73E-12 | 454 | 498 | No hit | No description |
PROSITE profile | PS51294 | 22.897 | 499 | 555 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.88E-27 | 502 | 598 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-13 | 504 | 553 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.0E-16 | 506 | 549 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.6E-20 | 506 | 556 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.02E-12 | 507 | 551 | No hit | No description |
SMART | SM00717 | 7.1E-12 | 556 | 604 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-15 | 557 | 601 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.6E-12 | 560 | 599 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.32E-11 | 560 | 602 | No hit | No description |
PROSITE profile | PS51294 | 15.019 | 560 | 606 | IPR017930 | Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1064 aa Download sequence Send to blast |
MASDSDEEFD GDDGFEADME ALKRACVLAG ASPGHADDDF SGRAVSNSVP SSPDTDDGVD 60 DVELVRDIQK RFALSTDVQV PLDMRPICSI FPIEGGNESE DDMETLRAIE RRFASYYDDT 120 TKEGLDKELH NAEQVGVTNI TSEEESCNNF FLERTNAGEG FPTCVDGNNS ALQISEGAIP 180 QDGGAENASS ESSGFPKSAQ AFVDAIKKNR AFQKLIRSKM IHVEARIEEL KKLKERVKIL 240 KDYQVSCRKR TGHALAQKKD ARVQLVLPRE RGNSKLNEKK SSALYYAPPE NSLVASYRDA 300 LEKFPVSVNR EKWSKEEREN LLKGVKQQFQ ETMFQRAIDL SDMDGSFGDM ANIDSNILSI 360 RDLNITPEMM RQFLPKVNWD RLASMYVPRH SGAECQTRWL NWEDPLINHE PWSVVQDKNL 420 LHIVQQKGLR TNRTPFQCLA RYQRSLNASI IKREWTEEED NKLRAAVEVF GESNWQVVAA 480 SLEGRTGTQC SNRWIKTLHP ARKRVGKWTA DEDKRLKVAV MLFGPKTWRK IAQYVPGRTH 540 VQCRERWANS LDPSLNLNGW TEEEDFKLES AIQEHGYSWS KVAACVAPRT DNQCRRRWKA 600 LFPHEVPLLR QARKIQKAAF IANFVDRESE RPSLKPDDFV PAPLLLQPSG SEPSRKRKIA 660 SRYFGIKAGR WMMGLGLVTT SLGNLFWIIK FGVFFFLGGR RGWGMALVVM SNMSSDDPTI 720 AENWRYGITY QSRKSKRQPK RKICTNRKRR RPANPGMLSN GNDLGGLEFS VANNNRTSKL 780 PPRKKRKREP YVEVPEISAS DEIETTNGDG IIFKRSTRGT EFDSGSDNDA KLDPSSFPNS 840 FSDARTLGGK AIKSRKRSIR RPRKNCSDLY VSQIYHPFPT SRKRKGPLRE FLGSNLDADP 900 SGELYDSSLS FEENSELESG AKQVEESHDC SSPLRCLAHD GPESNNFRTS SCCMQGKKKG 960 LKCRDVDHSN KLAETEEDDS ITLAAFIKKS VRLSDHNSNQ SGAIPEHNIH TPTTSRGCEI 1020 QGHGNGLGFG PSPPTSEAGI MDDDMPLAHF LNTLKRRVKP ATSK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 1e-32 | 412 | 606 | 6 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 1e-32 | 412 | 606 | 6 | 159 | MYB PROTO-ONCOGENE PROTEIN |
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Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 735 | 751 | KRQPKRKICTNRKRRRP |
2 | 746 | 750 | RKRRR |
3 | 782 | 787 | RKKRKR |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019177066.1 | 0.0 | PREDICTED: uncharacterized protein LOC109172334 isoform X1 | ||||
TrEMBL | A0A484LQ30 | 0.0 | A0A484LQ30_9ASTE; Uncharacterized protein | ||||
STRING | XP_009770188.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA10876 | 21 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18100.1 | 0.0 | myb domain protein 4r1 |