PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc002227.1_g00005.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB
Protein Properties Length: 1064aa    MW: 119808 Da    PI: 8.605
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc002227.1_g00005.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.76.3e-14453497247
                              SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                WT+eEd +l  av+ +G  +W  +a+ +  gRt+ qc +rw k 
  Itr_sc002227.1_g00005.1 453 REWTEEEDNKLRAAVEVFGESNWQVVAASLE-GRTGTQCSNRWIKT 497
                              68*****************************.***********987 PP

2Myb_DNA-binding54.13.7e-17506549246
                              SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
          Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                              g+WT++Ed++l+ av ++G++tW++Ia++++ gRt  qc++rw +
  Itr_sc002227.1_g00005.1 506 GKWTADEDKRLKVAVMLFGPKTWRKIAQYVP-GRTHVQCRERWAN 549
                              79*****************************.***********77 PP

3Myb_DNA-binding41.43.4e-13560599445
                              S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
          Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                              WT+eEd +l  a++++G   W+++a+++   Rt++qc+ rw 
  Itr_sc002227.1_g00005.1 560 WTEEEDFKLESAIQEHGYS-WSKVAACVA-PRTDNQCRRRWK 599
                              *****************99.*********.9**********7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.272305403IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.2E-7308331IPR009057Homeodomain-like
SMARTSM007172.5E-4309405IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-7378413IPR009057Homeodomain-like
SuperFamilySSF466891.06E-6385430IPR009057Homeodomain-like
SMARTSM0071711408448IPR001005SANT/Myb domain
SuperFamilySSF466892.81E-20431503IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-17444503IPR009057Homeodomain-like
PROSITE profilePS5129416.473447498IPR017930Myb domain
SMARTSM007172.2E-14451500IPR001005SANT/Myb domain
PfamPF002491.7E-12453496IPR001005SANT/Myb domain
CDDcd001674.73E-12454498No hitNo description
PROSITE profilePS5129422.897499555IPR017930Myb domain
SuperFamilySSF466896.88E-27502598IPR009057Homeodomain-like
SMARTSM007171.1E-13504553IPR001005SANT/Myb domain
PfamPF002498.0E-16506549IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.6E-20506556IPR009057Homeodomain-like
CDDcd001677.02E-12507551No hitNo description
SMARTSM007177.1E-12556604IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-15557601IPR009057Homeodomain-like
PfamPF002492.6E-12560599IPR001005SANT/Myb domain
CDDcd001671.32E-11560602No hitNo description
PROSITE profilePS5129415.019560606IPR017930Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1064 aa     Download sequence    Send to blast
MASDSDEEFD GDDGFEADME ALKRACVLAG ASPGHADDDF SGRAVSNSVP SSPDTDDGVD  60
DVELVRDIQK RFALSTDVQV PLDMRPICSI FPIEGGNESE DDMETLRAIE RRFASYYDDT  120
TKEGLDKELH NAEQVGVTNI TSEEESCNNF FLERTNAGEG FPTCVDGNNS ALQISEGAIP  180
QDGGAENASS ESSGFPKSAQ AFVDAIKKNR AFQKLIRSKM IHVEARIEEL KKLKERVKIL  240
KDYQVSCRKR TGHALAQKKD ARVQLVLPRE RGNSKLNEKK SSALYYAPPE NSLVASYRDA  300
LEKFPVSVNR EKWSKEEREN LLKGVKQQFQ ETMFQRAIDL SDMDGSFGDM ANIDSNILSI  360
RDLNITPEMM RQFLPKVNWD RLASMYVPRH SGAECQTRWL NWEDPLINHE PWSVVQDKNL  420
LHIVQQKGLR TNRTPFQCLA RYQRSLNASI IKREWTEEED NKLRAAVEVF GESNWQVVAA  480
SLEGRTGTQC SNRWIKTLHP ARKRVGKWTA DEDKRLKVAV MLFGPKTWRK IAQYVPGRTH  540
VQCRERWANS LDPSLNLNGW TEEEDFKLES AIQEHGYSWS KVAACVAPRT DNQCRRRWKA  600
LFPHEVPLLR QARKIQKAAF IANFVDRESE RPSLKPDDFV PAPLLLQPSG SEPSRKRKIA  660
SRYFGIKAGR WMMGLGLVTT SLGNLFWIIK FGVFFFLGGR RGWGMALVVM SNMSSDDPTI  720
AENWRYGITY QSRKSKRQPK RKICTNRKRR RPANPGMLSN GNDLGGLEFS VANNNRTSKL  780
PPRKKRKREP YVEVPEISAS DEIETTNGDG IIFKRSTRGT EFDSGSDNDA KLDPSSFPNS  840
FSDARTLGGK AIKSRKRSIR RPRKNCSDLY VSQIYHPFPT SRKRKGPLRE FLGSNLDADP  900
SGELYDSSLS FEENSELESG AKQVEESHDC SSPLRCLAHD GPESNNFRTS SCCMQGKKKG  960
LKCRDVDHSN KLAETEEDDS ITLAAFIKKS VRLSDHNSNQ SGAIPEHNIH TPTTSRGCEI  1020
QGHGNGLGFG PSPPTSEAGI MDDDMPLAHF LNTLKRRVKP ATSK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C1e-324126066159MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-324126066159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1735751KRQPKRKICTNRKRRRP
2746750RKRRR
3782787RKKRKR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019177066.10.0PREDICTED: uncharacterized protein LOC109172334 isoform X1
TrEMBLA0A484LQ300.0A0A484LQ30_9ASTE; Uncharacterized protein
STRINGXP_009770188.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA108762124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18100.10.0myb domain protein 4r1