PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc002223.1_g00005.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB_related

Protein Properties

Length: 526aa MW: 59768.4 Da PI: 4.5857

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc002223.1_g00005.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	28.7	3.1e-09	262	310	2	47
SSS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqky 47 ++WT+eE+el+ d+v ++ W+ a +++ +Rt+ +++s+++++ Itr_sc002223.1_g00005.1 262 QKWTEEEQELFHDVVSSYPASlgknFWRHLAVEFP-HRTRREIVSYYFNV 310 79***********9998888888******.*********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	6.9E-6	257	315	IPR009057	Homeodomain-like
SMART	SM00717	1.2E-5	260	313	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	5.08E-6	261	311	IPR009057	Homeodomain-like
Pfam	PF00249	3.6E-7	262	310	IPR001005	SANT/Myb domain
PROSITE profile	PS50090	6.539	263	311	IPR017877	Myb-like domain
CDD	cd00167	3.89E-8	263	311	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 526 aa Download sequence Send to blast
MVQKRPFEQE YLNEVSSKQP RHVETTDHLI SLEYPYEPAY LKAHAPGKPV SDKKYECVYT 60 DELPSFEKDR EMGCPGSASH SSWATSSTSE EDVRSEGQHN TSFSPEYYNH DIPFRTVTHS 120 KELYSYLLRN PPSKLVPVGP DFQAEIPECG GCGNKEKANC SEDACKTIDH SYESLESNCG 180 GQFDYENRLA GTCIVPISKS ESAAYSSEAV ASGRRDCCCE DAGSVRCIQQ HIIEAREKLK 240 TLLGEETFVK LGFCDMGEVV AQKWTEEEQE LFHDVVSSYP ASLGKNFWRH LAVEFPHRTR 300 REIVSYYFNV FMLRIRAEQN RLDPLNIDSD NDEWQEEAYD SAGEEAKMTD EDEDSVVESP 360 AHHDDPGHIL IYDDYKHPYD EDAGLAIWRD YKHLGHDTNK VVSTVPEECG DKLFEKHSSE 420 LTVQHPDRSE PNEANHAELD GPSTRVDNKH WTTRVDNKHW TSDYVGTGNS NGHEFVLEPR 480 FGREWNVGYS SCTKNNVDFL PTCSMIEEVF GSEACYDKSR DGYGSS

Sequence ? help Back to Top

Protein Sequence Length: 526 aa Download sequence Send to blast

MVQKRPFEQE YLNEVSSKQP RHVETTDHLI SLEYPYEPAY LKAHAPGKPV SDKKYECVYT  60
DELPSFEKDR EMGCPGSASH SSWATSSTSE EDVRSEGQHN TSFSPEYYNH DIPFRTVTHS  120
KELYSYLLRN PPSKLVPVGP DFQAEIPECG GCGNKEKANC SEDACKTIDH SYESLESNCG  180
GQFDYENRLA GTCIVPISKS ESAAYSSEAV ASGRRDCCCE DAGSVRCIQQ HIIEAREKLK  240
TLLGEETFVK LGFCDMGEVV AQKWTEEEQE LFHDVVSSYP ASLGKNFWRH LAVEFPHRTR  300
REIVSYYFNV FMLRIRAEQN RLDPLNIDSD NDEWQEEAYD SAGEEAKMTD EDEDSVVESP  360
AHHDDPGHIL IYDDYKHPYD EDAGLAIWRD YKHLGHDTNK VVSTVPEECG DKLFEKHSSE  420
LTVQHPDRSE PNEANHAELD GPSTRVDNKH WTTRVDNKHW TSDYVGTGNS NGHEFVLEPR  480
FGREWNVGYS SCTKNNVDFL PTCSMIEEVF GSEACYDKSR DGYGSS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019167023.1	0.0	PREDICTED: uncharacterized protein LOC109162794 isoform X1
Refseq	XP_019167024.1	0.0	PREDICTED: uncharacterized protein LOC109162794 isoform X1
Refseq	XP_019167025.1	0.0	PREDICTED: uncharacterized protein LOC109162794 isoform X1
TrEMBL	A0A1J6JTR3	1e-172	A0A1J6JTR3_NICAT; At-rich interactive domain-containing protein 2
STRING	XP_009789735.1	1e-172	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1514	16	25