PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc002200.1_g00003.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

NAC

Protein Properties

Length: 349aa MW: 40493 Da PI: 6.9642

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc002200.1_g00003.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	174.4	3.2e-54	7	131	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 +ppGfrFhPtdeelv++yL+kkv+ k+++l +vike+d+y++ePwdL+ + +e+++wyfFs++dkky+tg+r+nratk+g+Wkat Itr_sc002200.1_g00003.1 7 VPPGFRFHPTDEELVDYYLRKKVALKRIDL-DVIKEIDLYNIEPWDLQGC--EEQSDWYFFSHKDKKYPTGTRTNRATKAGFWKAT 89 69**************************.9***********844..4678************************** PP NAM 87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 g+dk+++s k+ l+g++ktLvfykgrap+g k+dW+mheyrle Itr_sc002200.1_g00003.1 90 GRDKAIYS-KHCLIGMRKTLVFYKGRAPNGLKSDWIMHEYRLE 131 ****.899***************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.35E-58	5	158	IPR003441	NAC domain
PROSITE profile	PS51005	57.172	7	158	IPR003441	NAC domain
Pfam	PF02365	2.1E-28	8	130	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence Send to blast
MNSLSHVPPG FRFHPTDEEL VDYYLRKKVA LKRIDLDVIK EIDLYNIEPW DLQGCEEQSD 60 WYFFSHKDKK YPTGTRTNRA TKAGFWKATG RDKAIYSKHC LIGMRKTLVF YKGRAPNGLK 120 SDWIMHEYRL ETNENGAPQA IGHPWQEEGW VVCRAFKKRM PTMARKEGAD HESPLCSNGW 180 YDDQISSFIP SDFESPRRIS THHHHHHPNY NNINPPPYNM NPHFLNSCKQ ELHHHQLHYN 240 IIVPHEHEHH PPFIHQSSSS SLPQLESPKL PHPTTQFHMI NSSSSSSPSL LYCNDQSVGD 300 DHDHLTTDWR VLDKFVASQL MSHDEEDNNN NNNGDGKETS LRASSSFQP

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence Send to blast

MNSLSHVPPG FRFHPTDEEL VDYYLRKKVA LKRIDLDVIK EIDLYNIEPW DLQGCEEQSD  60
WYFFSHKDKK YPTGTRTNRA TKAGFWKATG RDKAIYSKHC LIGMRKTLVF YKGRAPNGLK  120
SDWIMHEYRL ETNENGAPQA IGHPWQEEGW VVCRAFKKRM PTMARKEGAD HESPLCSNGW  180
YDDQISSFIP SDFESPRRIS THHHHHHPNY NNINPPPYNM NPHFLNSCKQ ELHHHQLHYN  240
IIVPHEHEHH PPFIHQSSSS SLPQLESPKL PHPTTQFHMI NSSSSSSPSL LYCNDQSVGD  300
DHDHLTTDWR VLDKFVASQL MSHDEEDNNN NNNGDGKETS LRASSSFQP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	7e-48	6	159	14	169	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250\|UniProtKB:Q9LVA1, ECO:0000269\|PubMed:25148240}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019171350.1	1e-174	PREDICTED: NAC domain-containing protein 7-like
Refseq	XP_019171351.1	1e-174	PREDICTED: NAC domain-containing protein 7-like
Swissprot	F4HYV5	1e-118	NAC26_ARATH; NAC domain-containing protein 26
TrEMBL	W9R240	1e-121	W9R240_9ROSA; NAC domain-containing protein 7
STRING	XP_010093669.1	1e-122	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA134	24	297

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G12260.1	1e-102	NAC 007

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]