PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc002180.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 215aa    MW: 23335 Da    PI: 4.8232
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc002180.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.14.3e-184696155
                      AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                             + y+GVr +  +g+Wv+eIr+p++   + r++lg+f  +e+Aa+a++ a+++++g
  Itr_sc002180.1_g00001.1 46 PVYRGVRMRN-WGKWVSEIREPRK---KSRIWLGTFPNPEMAARAHDVAALSIKG 96
                             68*****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.3E-124696IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-2147105IPR016177DNA-binding domain
SMARTSM003801.2E-3447110IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-3147105IPR001471AP2/ERF domain
PROSITE profilePS5103223.01147104IPR001471AP2/ERF domain
CDDcd000184.60E-3148106No hitNo description
PRINTSPR003671.3E-94859IPR001471AP2/ERF domain
PRINTSPR003671.3E-97086IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MSSDPPDCSS SSEVIFGSTR PVLDSGSAEK EPKKMKRSRD SGSKHPVYRG VRMRNWGKWV  60
SEIREPRKKS RIWLGTFPNP EMAARAHDVA ALSIKGNSAV LNFPDLAAAL PRPASLTPRD  120
IQVAAAKAAA MEKFDPVSSP SPSSSSSSEI DPATSEELSE IVELPRLGTS FDSPELGSEF  180
VYVDSVDGWL YPPPSWLGSA ADDDSSSFES LLWNY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-1938104572Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019197060.11e-104PREDICTED: ethylene-responsive transcription factor TINY-like
SwissprotQ9LYD36e-71DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A200QDK79e-86A0A200QDK7_9MAGN; AP2/ERF domain
STRINGXP_010249578.16e-77(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21224225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.13e-68ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]