PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc002152.1_g00004.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family HB-other
Protein Properties Length: 350aa    MW: 40178.4 Da    PI: 4.3791
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc002152.1_g00004.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox31.14e-10277325553
                              SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
                 Homeobox   5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                               +++k+qle+Le ++++++ p+ +++  + + ++L+ ++V  WF  +Ra
  Itr_sc002152.1_g00004.1 277 KRIKKKQLETLELVYRRSQRPTNAMISSIVHVTNLPHKRVVKWFEDKRA 325
                              5699********************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003894.7E-4269334IPR001356Homeobox domain
PROSITE profilePS500719.912270330IPR001356Homeobox domain
SuperFamilySSF466896.84E-9272327IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-8274325IPR009057Homeodomain-like
CDDcd000867.67E-6276325No hitNo description
PfamPF000461.2E-7277325IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0002229Biological Processdefense response to oomycetes
GO:0009414Biological Processresponse to water deprivation
GO:0009682Biological Processinduced systemic resistance
GO:0009787Biological Processregulation of abscisic acid-activated signaling pathway
GO:0010118Biological Processstomatal movement
GO:0050832Biological Processdefense response to fungus
GO:2000022Biological Processregulation of jasmonic acid mediated signaling pathway
GO:2000071Biological Processregulation of defense response by callose deposition
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MAASTSLRIS ITLQCTRNNA FFVDRHFSRT NLPFPRRRSS SSLLTFARRR SKPHRPATTS  60
SNKKKQKRDD EEDEDLDEDA FEALFRQLEE DLKNDNLSLD DDDDEITEED LANLERELEE  120
ALKDDELSGE LESIVDGEIK NVAEEEEEEE EEEEGEVAAA IKGDEDDDDD DDEDEDEDEK  180
PVRLRNWQLK RLAYALKDGR PDVCLDRAVV LELLRDPPPH LLLLSAALPD KPISTISEPP  240
SIPLETVPLE EATDDVETKT TVEMPVHVRQ RNWAAKKRIK KKQLETLELV YRRSQRPTNA  300
MISSIVHVTN LPHKRVVKWF EDKRAEDGVP DNHIPKLPYR RSAAPETSPS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019153788.10.0PREDICTED: protein OVEREXPRESSOR OF CATIONIC PEROXIDASE 3-like
RefseqXP_019153789.10.0PREDICTED: protein OVEREXPRESSOR OF CATIONIC PEROXIDASE 3-like
RefseqXP_019153790.10.0PREDICTED: protein OVEREXPRESSOR OF CATIONIC PEROXIDASE 3-like
TrEMBLA0A484NEL11e-125A0A484NEL1_9ASTE; Uncharacterized protein
STRINGPGSC0003DMT4000535771e-111(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA94282327
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11270.13e-37overexpressor of cationic peroxidase 3